Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19251 | 3' | -59.5 | NC_004684.1 | + | 23737 | 0.68 | 0.4408 |
Target: 5'- -----cGCUGGCGGCGCacugcUCGgugcgcaguucggGCCGUg -3' miRNA: 3'- gcaacaCGACCGCCGCG-----AGCa------------CGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 63063 | 0.7 | 0.317818 |
Target: 5'- -----gGUUGGUGGCgGCUacCGUGCCGCc -3' miRNA: 3'- gcaacaCGACCGCCG-CGA--GCACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 19832 | 0.7 | 0.348795 |
Target: 5'- ---cGUGUgacGGCGGCGCaugcCGguUGCCGCg -3' miRNA: 3'- gcaaCACGa--CCGCCGCGa---GC--ACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 50660 | 0.69 | 0.381865 |
Target: 5'- gGggGUGCggaccaGGCGuGCGCcCGgUGCCGUg -3' miRNA: 3'- gCaaCACGa-----CCGC-CGCGaGC-ACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 58604 | 0.69 | 0.399166 |
Target: 5'- gCGcgGUGCUuugaucgacGGCccguGGCgGCUgGUGCCGCg -3' miRNA: 3'- -GCaaCACGA---------CCG----CCG-CGAgCACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 43472 | 0.68 | 0.408002 |
Target: 5'- ---gGUGC-GGCGGCaGCagGUGCgGCg -3' miRNA: 3'- gcaaCACGaCCGCCG-CGagCACGgCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 17242 | 0.68 | 0.41696 |
Target: 5'- ---gGUGCUgacgaaaugacGGCGGCGCUgGUcCUGCa -3' miRNA: 3'- gcaaCACGA-----------CCGCCGCGAgCAcGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 18351 | 0.68 | 0.41696 |
Target: 5'- -----aGCcgaccGGCGGCGCg-GUGCCGCu -3' miRNA: 3'- gcaacaCGa----CCGCCGCGagCACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 62970 | 0.68 | 0.43523 |
Target: 5'- uGgcGUGCUcGGUGGUGCgcaCGUGgCCGg -3' miRNA: 3'- gCaaCACGA-CCGCCGCGa--GCAC-GGCg -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 61501 | 0.7 | 0.310405 |
Target: 5'- -----gGC-GGCGGCGCUCGaUGCgCGCc -3' miRNA: 3'- gcaacaCGaCCGCCGCGAGC-ACG-GCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 8534 | 0.71 | 0.295975 |
Target: 5'- aGUcGcgGCUGaucggcaacggcGUGGUGUUCGUGCCGCa -3' miRNA: 3'- gCAaCa-CGAC------------CGCCGCGAGCACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 22371 | 0.71 | 0.295975 |
Target: 5'- gGUcGcGCUGGCGGUGgaCGUGCagGCg -3' miRNA: 3'- gCAaCaCGACCGCCGCgaGCACGg-CG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 1062 | 0.79 | 0.084589 |
Target: 5'- gGUUGUgcugGCUGGCGGCGCUggaCGUgaucggugaccagGCCGCg -3' miRNA: 3'- gCAACA----CGACCGCCGCGA---GCA-------------CGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 56711 | 0.77 | 0.108391 |
Target: 5'- gGggGUgaaGCUGGCGGUGCUgaUGCCGCg -3' miRNA: 3'- gCaaCA---CGACCGCCGCGAgcACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 7549 | 0.74 | 0.174866 |
Target: 5'- aCGcgGUGCUggaccggccccgGGUGGCGCUgGUGCgGCu -3' miRNA: 3'- -GCaaCACGA------------CCGCCGCGAgCACGgCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 42541 | 0.74 | 0.193913 |
Target: 5'- uCGgcGUGCUGaCGGCGUUCGgcuucggcgugGCCGCc -3' miRNA: 3'- -GCaaCACGACcGCCGCGAGCa----------CGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 19607 | 0.72 | 0.255827 |
Target: 5'- cCGagGUGCUGGCGGUgacGCUCGgcgacaCCGUg -3' miRNA: 3'- -GCaaCACGACCGCCG---CGAGCac----GGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 46683 | 0.72 | 0.262195 |
Target: 5'- gCGUUGcGgUGGCGGUGCg-GUGgCGCg -3' miRNA: 3'- -GCAACaCgACCGCCGCGagCACgGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 40166 | 0.71 | 0.266728 |
Target: 5'- aCGgccuUGCUGGCGGCgaagcucaugcgcuGCUCGcUGUCGCu -3' miRNA: 3'- -GCaac-ACGACCGCCG--------------CGAGC-ACGGCG- -5' |
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19251 | 3' | -59.5 | NC_004684.1 | + | 7384 | 0.71 | 0.282071 |
Target: 5'- --cUGUGCUGGUGGaUGCgccCGcUGCUGCg -3' miRNA: 3'- gcaACACGACCGCC-GCGa--GC-ACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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