miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 3' -59.5 NC_004684.1 + 536 0.7 0.333043
Target:  5'- ---cGUGCUGGCcaGCGCggUCGagGCCGCc -3'
miRNA:   3'- gcaaCACGACCGc-CGCG--AGCa-CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 1062 0.79 0.084589
Target:  5'- gGUUGUgcugGCUGGCGGCGCUggaCGUgaucggugaccagGCCGCg -3'
miRNA:   3'- gCAACA----CGACCGCCGCGA---GCA-------------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 1480 0.66 0.562638
Target:  5'- aCGUgcccgGUGC-GGCGGCcCUgGUggccaaccugcgcGCCGCg -3'
miRNA:   3'- -GCAa----CACGaCCGCCGcGAgCA-------------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 5042 0.68 0.444537
Target:  5'- gGUgcgcagGCUGGCGcGCGCU-GUGCUGg -3'
miRNA:   3'- gCAaca---CGACCGC-CGCGAgCACGGCg -5'
19251 3' -59.5 NC_004684.1 + 5534 0.66 0.563675
Target:  5'- -----aGCUGGUggaugaGGCGCagaaCGUGCUGCg -3'
miRNA:   3'- gcaacaCGACCG------CCGCGa---GCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 5881 0.67 0.512572
Target:  5'- aCGUcacUGCUGGC-GCGCaUCGagcGCCGCc -3'
miRNA:   3'- -GCAac-ACGACCGcCGCG-AGCa--CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 5898 0.66 0.531792
Target:  5'- gGUg--GC-GGCGGCGCUgaucgcgcacgacCGgcugGCCGCg -3'
miRNA:   3'- gCAacaCGaCCGCCGCGA-------------GCa---CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 6144 0.66 0.574073
Target:  5'- uCGUUGaGCaguucgacGGCGGCgGCcagCGUGCgGCg -3'
miRNA:   3'- -GCAACaCGa-------CCGCCG-CGa--GCACGgCG- -5'
19251 3' -59.5 NC_004684.1 + 7384 0.71 0.282071
Target:  5'- --cUGUGCUGGUGGaUGCgccCGcUGCUGCg -3'
miRNA:   3'- gcaACACGACCGCC-GCGa--GC-ACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 7549 0.74 0.174866
Target:  5'- aCGcgGUGCUggaccggccccgGGUGGCGCUgGUGCgGCu -3'
miRNA:   3'- -GCaaCACGA------------CCGCCGCGAgCACGgCG- -5'
19251 3' -59.5 NC_004684.1 + 7600 0.71 0.303124
Target:  5'- ----aUGCUGGCGGUGUUCGccuccugGCCGg -3'
miRNA:   3'- gcaacACGACCGCCGCGAGCa------CGGCg -5'
19251 3' -59.5 NC_004684.1 + 7906 0.67 0.492658
Target:  5'- cCGUUGgggccGCUGGCcGCGCagGUgguggacaucGCCGCc -3'
miRNA:   3'- -GCAACa----CGACCGcCGCGagCA----------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 8534 0.71 0.295975
Target:  5'- aGUcGcgGCUGaucggcaacggcGUGGUGUUCGUGCCGCa -3'
miRNA:   3'- gCAaCa-CGAC------------CGCCGCGAGCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 9253 0.66 0.559529
Target:  5'- -----cGCUGGCGGUGCUCauccccgagcugGCCGa -3'
miRNA:   3'- gcaacaCGACCGCCGCGAGca----------CGGCg -5'
19251 3' -59.5 NC_004684.1 + 14494 0.67 0.463479
Target:  5'- ---cGUGCUGGcCGGaCGCUCcuggGUGCaUGCc -3'
miRNA:   3'- gcaaCACGACC-GCC-GCGAG----CACG-GCG- -5'
19251 3' -59.5 NC_004684.1 + 17242 0.68 0.41696
Target:  5'- ---gGUGCUgacgaaaugacGGCGGCGCUgGUcCUGCa -3'
miRNA:   3'- gcaaCACGA-----------CCGCCGCGAgCAcGGCG- -5'
19251 3' -59.5 NC_004684.1 + 17278 0.66 0.522654
Target:  5'- ----cUGCUcGGCGGCGCUgGUuuucuggccgggGUCGCg -3'
miRNA:   3'- gcaacACGA-CCGCCGCGAgCA------------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 17644 0.67 0.502572
Target:  5'- -----cGCUGGU-GCGCUCcGUGCCGa -3'
miRNA:   3'- gcaacaCGACCGcCGCGAG-CACGGCg -5'
19251 3' -59.5 NC_004684.1 + 18351 0.68 0.41696
Target:  5'- -----aGCcgaccGGCGGCGCg-GUGCCGCu -3'
miRNA:   3'- gcaacaCGa----CCGCCGCGagCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 19607 0.72 0.255827
Target:  5'- cCGagGUGCUGGCGGUgacGCUCGgcgacaCCGUg -3'
miRNA:   3'- -GCaaCACGACCGCCG---CGAGCac----GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.