miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 61057 1.05 0.001408
Target:  5'- uUCAACAAUACGGGCCGGUGGCGGCAUu -3'
miRNA:   3'- -AGUUGUUAUGCCCGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 40731 0.75 0.197855
Target:  5'- cCAGCGcgGCgGGGgCGGUGGCGGUg- -3'
miRNA:   3'- aGUUGUuaUG-CCCgGCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 51986 0.74 0.256401
Target:  5'- gUCAACAAUGCuGGCCGccccgaUGGCGGCc- -3'
miRNA:   3'- -AGUUGUUAUGcCCGGCc-----ACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 59820 0.73 0.262978
Target:  5'- cUCAGCAuggcGCGGuGCCGGUGuaGGCGa -3'
miRNA:   3'- -AGUUGUua--UGCC-CGGCCACcgCCGUa -5'
19254 3' -56.8 NC_004684.1 + 30627 0.72 0.312882
Target:  5'- gUCGGCAc--CGGGCgCGGcccUGGCGGCGUc -3'
miRNA:   3'- -AGUUGUuauGCCCG-GCC---ACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 40972 0.72 0.326823
Target:  5'- gCGGCGAaccccgcugccaGCGcGCCGGUGGCGGCGUu -3'
miRNA:   3'- aGUUGUUa-----------UGCcCGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 9212 0.72 0.3284
Target:  5'- cCAGCA----GGuGCUGGUGGCGGCAc -3'
miRNA:   3'- aGUUGUuaugCC-CGGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 33815 0.72 0.34448
Target:  5'- uUCGGCGucgGCGGGCggugugcccggCGGcGGCGGCAa -3'
miRNA:   3'- -AGUUGUua-UGCCCG-----------GCCaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 13087 0.7 0.395138
Target:  5'- gUCAGCcgccaagggggccGAUGCGcgcacccccGGCCgGGUGGCGGCGc -3'
miRNA:   3'- -AGUUG-------------UUAUGC---------CCGG-CCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 23268 0.7 0.396038
Target:  5'- cUCAACGAcGCGGGCgaggagCGcGUGGuCGGCAc -3'
miRNA:   3'- -AGUUGUUaUGCCCG------GC-CACC-GCCGUa -5'
19254 3' -56.8 NC_004684.1 + 49163 0.7 0.433061
Target:  5'- -gGGCAGUACGGcGCagucuCGGcGGCGGCGg -3'
miRNA:   3'- agUUGUUAUGCC-CG-----GCCaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 40579 0.7 0.433061
Target:  5'- cUCggUGAUcucCGGGUCGGUGGUGGuCAg -3'
miRNA:   3'- -AGuuGUUAu--GCCCGGCCACCGCC-GUa -5'
19254 3' -56.8 NC_004684.1 + 57130 0.69 0.452312
Target:  5'- gCAGCAcugGCGcGGCUGGUucgccuccauGGCGGCGg -3'
miRNA:   3'- aGUUGUua-UGC-CCGGCCA----------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 39926 0.69 0.452312
Target:  5'- aCcuCAAUACGcuugucaccGCCGGUGGUGGCAc -3'
miRNA:   3'- aGuuGUUAUGCc--------CGGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 26586 0.69 0.461127
Target:  5'- gCGGCGGUgugcGCGGGuucgccaCCGGcGGCGGCGUc -3'
miRNA:   3'- aGUUGUUA----UGCCC-------GGCCaCCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 9548 0.69 0.462112
Target:  5'- -uGGCAAU-CGGGCgGGUaccGGCGGCc- -3'
miRNA:   3'- agUUGUUAuGCCCGgCCA---CCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 10690 0.69 0.462112
Target:  5'- cUCAACGGU-CGGGaCgCGGUGGCucgcaaccGGCAg -3'
miRNA:   3'- -AGUUGUUAuGCCC-G-GCCACCG--------CCGUa -5'
19254 3' -56.8 NC_004684.1 + 43517 0.69 0.472022
Target:  5'- gCGGCAGggGCGGGagCGGUGGCuGCGc -3'
miRNA:   3'- aGUUGUUa-UGCCCg-GCCACCGcCGUa -5'
19254 3' -56.8 NC_004684.1 + 35650 0.69 0.482038
Target:  5'- cCGAC-GUACaGGGCCGucGGCGGCGg -3'
miRNA:   3'- aGUUGuUAUG-CCCGGCcaCCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 33502 0.69 0.492156
Target:  5'- gCGGCccuGUacucGCGGG-CGGUGGCGGCu- -3'
miRNA:   3'- aGUUGu--UA----UGCCCgGCCACCGCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.