miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 3041 0.66 0.630238
Target:  5'- --cGCAcaACGaGGCCcgGGUGGUGGCGc -3'
miRNA:   3'- aguUGUuaUGC-CCGG--CCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 7530 0.67 0.58687
Target:  5'- cCGGCAccgACcuGGCCGccGUGGCGGCGUu -3'
miRNA:   3'- aGUUGUua-UGc-CCGGC--CACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 7573 0.67 0.565374
Target:  5'- -uGGCGcugGUGC-GGCUGGUGcGCGGCAa -3'
miRNA:   3'- agUUGU---UAUGcCCGGCCAC-CGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 9212 0.72 0.3284
Target:  5'- cCAGCA----GGuGCUGGUGGCGGCAc -3'
miRNA:   3'- aGUUGUuaugCC-CGGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 9548 0.69 0.462112
Target:  5'- -uGGCAAU-CGGGCgGGUaccGGCGGCc- -3'
miRNA:   3'- agUUGUUAuGCCCGgCCA---CCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 10690 0.69 0.462112
Target:  5'- cUCAACGGU-CGGGaCgCGGUGGCucgcaaccGGCAg -3'
miRNA:   3'- -AGUUGUUAuGCCC-G-GCCACCG--------CCGUa -5'
19254 3' -56.8 NC_004684.1 + 11362 0.68 0.523069
Target:  5'- -aGACccgcgaGGuGCCGGUGGUGGCGUc -3'
miRNA:   3'- agUUGuuaug-CC-CGGCCACCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 11853 0.67 0.58687
Target:  5'- uUCGGCA--ACGGGUacgaacucGUGGCGGCGc -3'
miRNA:   3'- -AGUUGUuaUGCCCGgc------CACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 13087 0.7 0.395138
Target:  5'- gUCAGCcgccaagggggccGAUGCGcgcacccccGGCCgGGUGGCGGCGc -3'
miRNA:   3'- -AGUUG-------------UUAUGC---------CCGG-CCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 14932 0.67 0.565374
Target:  5'- gCGGCcAUGCcgucGGGCauccCGGUGGCGGCc- -3'
miRNA:   3'- aGUUGuUAUG----CCCG----GCCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 18116 0.66 0.641107
Target:  5'- -aAGCAGUACGGcuaccuGCUGcugGGCGGCAa -3'
miRNA:   3'- agUUGUUAUGCC------CGGCca-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 18284 0.68 0.516824
Target:  5'- cCGACGccgACGGcgaccuguggcaccuGCCGGuUGGCGGCGa -3'
miRNA:   3'- aGUUGUua-UGCC---------------CGGCC-ACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 22342 0.69 0.492156
Target:  5'- ---cCGGUACaGG-CGGUGGCGGCGg -3'
miRNA:   3'- aguuGUUAUGcCCgGCCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 23268 0.7 0.396038
Target:  5'- cUCAACGAcGCGGGCgaggagCGcGUGGuCGGCAc -3'
miRNA:   3'- -AGUUGUUaUGCCCG------GC-CACC-GCCGUa -5'
19254 3' -56.8 NC_004684.1 + 23760 0.66 0.630238
Target:  5'- --cGCAGUuCGGGCCGuGggGcGCGGCGUu -3'
miRNA:   3'- aguUGUUAuGCCCGGC-Ca-C-CGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 23967 0.66 0.662811
Target:  5'- cUCGGCcucgcCGGGCCucgGGUucGGCGGCGg -3'
miRNA:   3'- -AGUUGuuau-GCCCGG---CCA--CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 25017 0.66 0.673626
Target:  5'- cUCAGCGccgGUGCa-GCUGGaGGCGGCAUc -3'
miRNA:   3'- -AGUUGU---UAUGccCGGCCaCCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 25660 0.67 0.58687
Target:  5'- gCGGCGGUAcCGGGCaGGgcgcgaccuacGGCGGCAa -3'
miRNA:   3'- aGUUGUUAU-GCCCGgCCa----------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 25806 0.66 0.641107
Target:  5'- gUCAcCA--ACuGGCCgGGUGGCGGCc- -3'
miRNA:   3'- -AGUuGUuaUGcCCGG-CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 26586 0.69 0.461127
Target:  5'- gCGGCGGUgugcGCGGGuucgccaCCGGcGGCGGCGUc -3'
miRNA:   3'- aGUUGUUA----UGCCC-------GGCCaCCGCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.