Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19254 | 3' | -56.8 | NC_004684.1 | + | 40366 | 0.67 | 0.58687 |
Target: 5'- cUUGGCcuUGgGGGCCucggcGGUGGCGGCc- -3' miRNA: 3'- -AGUUGuuAUgCCCGG-----CCACCGCCGua -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 57186 | 0.68 | 0.512677 |
Target: 5'- -gGGCGcagGCGGGCCuGGaaGGCGGCGg -3' miRNA: 3'- agUUGUua-UGCCCGG-CCa-CCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 11362 | 0.68 | 0.523069 |
Target: 5'- -aGACccgcgaGGuGCCGGUGGUGGCGUc -3' miRNA: 3'- agUUGuuaug-CC-CGGCCACCGCCGUA- -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 62977 | 0.68 | 0.554701 |
Target: 5'- cUCggUggUGCGcacguGGCCGGUGGcCGGgAa -3' miRNA: 3'- -AGuuGuuAUGC-----CCGGCCACC-GCCgUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 33768 | 0.67 | 0.565374 |
Target: 5'- cUCAGCuacaACGGGaucucggCGGUcGGCGGCAa -3' miRNA: 3'- -AGUUGuua-UGCCCg------GCCA-CCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 7573 | 0.67 | 0.565374 |
Target: 5'- -uGGCGcugGUGC-GGCUGGUGcGCGGCAa -3' miRNA: 3'- agUUGU---UAUGcCCGGCCAC-CGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 64482 | 0.67 | 0.565374 |
Target: 5'- -------aGCaGGCCGGUGGUGGCc- -3' miRNA: 3'- aguuguuaUGcCCGGCCACCGCCGua -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 11853 | 0.67 | 0.58687 |
Target: 5'- uUCGGCA--ACGGGUacgaacucGUGGCGGCGc -3' miRNA: 3'- -AGUUGUuaUGCCCGgc------CACCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 25660 | 0.67 | 0.58687 |
Target: 5'- gCGGCGGUAcCGGGCaGGgcgcgaccuacGGCGGCAa -3' miRNA: 3'- aGUUGUUAU-GCCCGgCCa----------CCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 22342 | 0.69 | 0.492156 |
Target: 5'- ---cCGGUACaGG-CGGUGGCGGCGg -3' miRNA: 3'- aguuGUUAUGcCCgGCCACCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 33502 | 0.69 | 0.492156 |
Target: 5'- gCGGCccuGUacucGCGGG-CGGUGGCGGCu- -3' miRNA: 3'- aGUUGu--UA----UGCCCgGCCACCGCCGua -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 43517 | 0.69 | 0.472022 |
Target: 5'- gCGGCAGggGCGGGagCGGUGGCuGCGc -3' miRNA: 3'- aGUUGUUa-UGCCCg-GCCACCGcCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 40731 | 0.75 | 0.197855 |
Target: 5'- cCAGCGcgGCgGGGgCGGUGGCGGUg- -3' miRNA: 3'- aGUUGUuaUG-CCCgGCCACCGCCGua -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 59820 | 0.73 | 0.262978 |
Target: 5'- cUCAGCAuggcGCGGuGCCGGUGuaGGCGa -3' miRNA: 3'- -AGUUGUua--UGCC-CGGCCACcgCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 33815 | 0.72 | 0.34448 |
Target: 5'- uUCGGCGucgGCGGGCggugugcccggCGGcGGCGGCAa -3' miRNA: 3'- -AGUUGUua-UGCCCG-----------GCCaCCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 49163 | 0.7 | 0.433061 |
Target: 5'- -gGGCAGUACGGcGCagucuCGGcGGCGGCGg -3' miRNA: 3'- agUUGUUAUGCC-CG-----GCCaCCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 40579 | 0.7 | 0.433061 |
Target: 5'- cUCggUGAUcucCGGGUCGGUGGUGGuCAg -3' miRNA: 3'- -AGuuGUUAu--GCCCGGCCACCGCC-GUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 57130 | 0.69 | 0.452312 |
Target: 5'- gCAGCAcugGCGcGGCUGGUucgccuccauGGCGGCGg -3' miRNA: 3'- aGUUGUua-UGC-CCGGCCA----------CCGCCGUa -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 26586 | 0.69 | 0.461127 |
Target: 5'- gCGGCGGUgugcGCGGGuucgccaCCGGcGGCGGCGUc -3' miRNA: 3'- aGUUGUUA----UGCCC-------GGCCaCCGCCGUA- -5' |
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19254 | 3' | -56.8 | NC_004684.1 | + | 10690 | 0.69 | 0.462112 |
Target: 5'- cUCAACGGU-CGGGaCgCGGUGGCucgcaaccGGCAg -3' miRNA: 3'- -AGUUGUUAuGCCC-G-GCCACCG--------CCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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