miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 66474 0.74 0.137351
Target:  5'- -cACGCCGCCACCcg--GugGCGGCUa -3'
miRNA:   3'- guUGCGGCGGUGGccagCugCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 4011 0.74 0.137351
Target:  5'- -uACGCCGCCAUCGGcUGGCGCgucGGCc -3'
miRNA:   3'- guUGCGGCGGUGGCCaGCUGCG---CCGa -5'
19254 5' -61.6 NC_004684.1 + 22192 0.74 0.140984
Target:  5'- -cGCGCUGCCGCUGGa--GCGCGGCg -3'
miRNA:   3'- guUGCGGCGGUGGCCagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 16255 0.74 0.151235
Target:  5'- -uACGUCGCUcgcccgguguucgcGCCGGgccCGACGCGGCg -3'
miRNA:   3'- guUGCGGCGG--------------UGGCCa--GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 28563 0.73 0.156409
Target:  5'- cCAACaccCCGCCACCGGUguGCGgCGGCUg -3'
miRNA:   3'- -GUUGc--GGCGGUGGCCAgcUGC-GCCGA- -5'
19254 5' -61.6 NC_004684.1 + 42218 0.73 0.156409
Target:  5'- cCGACGUgGCCGCCGGugUCGGCacCGGCg -3'
miRNA:   3'- -GUUGCGgCGGUGGCC--AGCUGc-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 61309 0.73 0.164259
Target:  5'- aCGAgGCCGCCcCCGGcaUCGgcuaccaGCGCGGCg -3'
miRNA:   3'- -GUUgCGGCGGuGGCC--AGC-------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 42630 0.73 0.167669
Target:  5'- --cCGCCGCCGCCGGUgcuggugccgccagCGaugaGCGCGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCA--------------GC----UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 17293 0.73 0.168964
Target:  5'- gGGgGCCaGCCGCCuGGUCGugGUGGaCUg -3'
miRNA:   3'- gUUgCGG-CGGUGG-CCAGCugCGCC-GA- -5'
19254 5' -61.6 NC_004684.1 + 38821 0.73 0.173345
Target:  5'- gCAGcCGCCGCaCACCGGU-GGCGgGGUg -3'
miRNA:   3'- -GUU-GCGGCG-GUGGCCAgCUGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 1621 0.73 0.173345
Target:  5'- -uGCGCgCGcCCACCGG-CG-CGCGGCg -3'
miRNA:   3'- guUGCG-GC-GGUGGCCaGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18071 0.73 0.177828
Target:  5'- cCAugGCCGCCgACgGGUCGAUccugGaCGGCa -3'
miRNA:   3'- -GUugCGGCGG-UGgCCAGCUG----C-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 10886 0.73 0.177828
Target:  5'- cCGACGCCGgugaCCACCcgGGUCGGCGCguacaGGCc -3'
miRNA:   3'- -GUUGCGGC----GGUGG--CCAGCUGCG-----CCGa -5'
19254 5' -61.6 NC_004684.1 + 5902 0.73 0.177828
Target:  5'- gAGCGCCGCCGCCu----GCGCGGCg -3'
miRNA:   3'- gUUGCGGCGGUGGccagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 38664 0.72 0.187103
Target:  5'- aCGGCGUCGaCCugauCCaGGUcCGGCGCGGCUc -3'
miRNA:   3'- -GUUGCGGC-GGu---GG-CCA-GCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 12202 0.72 0.189008
Target:  5'- cCAGCGCCGCCGCCagcggugcguucuccGGgggugcuucCGGCaGCGGCUc -3'
miRNA:   3'- -GUUGCGGCGGUGG---------------CCa--------GCUG-CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 4457 0.72 0.196801
Target:  5'- -cGCGCCGCgCGCUGGUCGGCuucgucacCGGCc -3'
miRNA:   3'- guUGCGGCG-GUGGCCAGCUGc-------GCCGa -5'
19254 5' -61.6 NC_004684.1 + 2281 0.72 0.201813
Target:  5'- --uUGCCGCCAgcCUGGgccaCGACGCGGUg -3'
miRNA:   3'- guuGCGGCGGU--GGCCa---GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22328 0.72 0.201813
Target:  5'- cCGugGcCCGCCAcCCGGUacaggcgGugGCGGCg -3'
miRNA:   3'- -GUugC-GGCGGU-GGCCAg------CugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 47079 0.71 0.211641
Target:  5'- gAugGCCGCCGCCGccaugguGUCGGCGCacuucucGCUg -3'
miRNA:   3'- gUugCGGCGGUGGC-------CAGCUGCGc------CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.