miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19255 5' -60.1 NC_004684.1 + 25586 0.84 0.028051
Target:  5'- -gGGUGGUCcacgaagaacgUCGGCGUcgGCACCUGGCCg -3'
miRNA:   3'- aaCCACCGG-----------AGCCGCA--UGUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 7306 0.7 0.268304
Target:  5'- -gGGUGGCC-CGGUGaAgGCCcgcacgGGCCg -3'
miRNA:   3'- aaCCACCGGaGCCGCaUgUGGa-----CCGG- -5'
19255 5' -60.1 NC_004684.1 + 15933 0.7 0.281764
Target:  5'- cUGGgGGCCUCGGC---CACCgGGCg -3'
miRNA:   3'- aACCaCCGGAGCCGcauGUGGaCCGg -5'
19255 5' -60.1 NC_004684.1 + 40031 0.66 0.514008
Target:  5'- aUGGUGGCCUUGGgCaucAUGCCgGuGCCc -3'
miRNA:   3'- aACCACCGGAGCC-Gca-UGUGGaC-CGG- -5'
19255 5' -60.1 NC_004684.1 + 51705 0.75 0.133491
Target:  5'- -cGGUGGCgUCGGUGc-CGCCgcUGGCCa -3'
miRNA:   3'- aaCCACCGgAGCCGCauGUGG--ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 25259 0.74 0.152556
Target:  5'- gUGGUGGCgUCGGCGUugaACACCauGUCg -3'
miRNA:   3'- aACCACCGgAGCCGCA---UGUGGacCGG- -5'
19255 5' -60.1 NC_004684.1 + 41079 0.73 0.169554
Target:  5'- -cGGcGGCC-CGGCG---GCCUGGCCg -3'
miRNA:   3'- aaCCaCCGGaGCCGCaugUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 57579 0.73 0.188226
Target:  5'- -cGGUGGCCUUGaGCGUcgggugcCACCggcgcagGGCCu -3'
miRNA:   3'- aaCCACCGGAGC-CGCAu------GUGGa------CCGG- -5'
19255 5' -60.1 NC_004684.1 + 7153 0.72 0.214091
Target:  5'- -aGGUGGCCaccgccugCGG-GUGCACCUacaacgccgaGGCCa -3'
miRNA:   3'- aaCCACCGGa-------GCCgCAUGUGGA----------CCGG- -5'
19255 5' -60.1 NC_004684.1 + 44428 0.71 0.249093
Target:  5'- aUGGcGGCgUUGGCGcGCuuCUGGCCu -3'
miRNA:   3'- aACCaCCGgAGCCGCaUGugGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 53502 0.72 0.219617
Target:  5'- -cGGUGaucGCCUUGGUGUcgACACCcuccugaaUGGCCa -3'
miRNA:   3'- aaCCAC---CGGAGCCGCA--UGUGG--------ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 61371 0.72 0.207086
Target:  5'- cUGGcGGCCUaaaGGCcaccgcguccgaugGUGCGCCUGaGCCa -3'
miRNA:   3'- aACCaCCGGAg--CCG--------------CAUGUGGAC-CGG- -5'
19255 5' -60.1 NC_004684.1 + 9378 0.8 0.055298
Target:  5'- aUGGUcGGCCUCGGCGaagUACGCCaGGCa -3'
miRNA:   3'- aACCA-CCGGAGCCGC---AUGUGGaCCGg -5'
19255 5' -60.1 NC_004684.1 + 57237 0.71 0.236928
Target:  5'- -cGGUGGCCagCGGCGgcuggcugaGCACgaGGUCa -3'
miRNA:   3'- aaCCACCGGa-GCCGCa--------UGUGgaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 54527 0.79 0.071108
Target:  5'- -cGGcGGCCUCGGCGgugGCGgCCUcGGCCu -3'
miRNA:   3'- aaCCaCCGGAGCCGCa--UGU-GGA-CCGG- -5'
19255 5' -60.1 NC_004684.1 + 2042 0.72 0.198225
Target:  5'- cUGGUGGCCcUGGgGgcCGCCaucgUGGCCu -3'
miRNA:   3'- aACCACCGGaGCCgCauGUGG----ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 12718 0.71 0.249093
Target:  5'- cUGGUGGCUcccCGGUaGggagACACCaUGGCCa -3'
miRNA:   3'- aACCACCGGa--GCCG-Ca---UGUGG-ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 55418 0.7 0.281764
Target:  5'- -cGGUGccGCCggucgCGGUGUGCGCCgcagGuGCCa -3'
miRNA:   3'- aaCCAC--CGGa----GCCGCAUGUGGa---C-CGG- -5'
19255 5' -60.1 NC_004684.1 + 52122 0.77 0.096367
Target:  5'- cUGGUGGCCaccagGGUGUugGCCaGGCCa -3'
miRNA:   3'- aACCACCGGag---CCGCAugUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 47036 0.74 0.160853
Target:  5'- -gGGUGGCCUgcgCGGUgacgGUGCACCgGGCg -3'
miRNA:   3'- aaCCACCGGA---GCCG----CAUGUGGaCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.