Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19257 | 5' | -57.2 | NC_004684.1 | + | 27115 | 0.66 | 0.669074 |
Target: 5'- uUUGCGCUG-GCCGUuGCCg-GGACg -3' miRNA: 3'- gAGCGCGACaCGGUAcCGGagCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 62167 | 0.66 | 0.669074 |
Target: 5'- -gCGCGCggacaCCAUGGCCUCaccugGAGCa -3' miRNA: 3'- gaGCGCGacac-GGUACCGGAG-----CUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 34189 | 0.66 | 0.669074 |
Target: 5'- -cCGgGCUGUccgucGCCAUGGCCaCGGugACg -3' miRNA: 3'- gaGCgCGACA-----CGGUACCGGaGCU--UGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 67065 | 0.66 | 0.658315 |
Target: 5'- uUCGCGCcguacccgGUGCgGgcguUGGCCUCGGcgGCc -3' miRNA: 3'- gAGCGCGa-------CACGgU----ACCGGAGCU--UGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 57204 | 0.66 | 0.658315 |
Target: 5'- gCUgGCGCUGggcgGUC-UGGaacuCCUCGAGCg -3' miRNA: 3'- -GAgCGCGACa---CGGuACC----GGAGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 55437 | 0.66 | 0.658315 |
Target: 5'- -gUGCGCcgcagGUGCCAggcuggcgaccaUGGCCagCGGACg -3' miRNA: 3'- gaGCGCGa----CACGGU------------ACCGGa-GCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 40572 | 0.66 | 0.657238 |
Target: 5'- -gCGCGCUGgugucGuucaucaaccggcCCGUGGCgUCGAACg -3' miRNA: 3'- gaGCGCGACa----C-------------GGUACCGgAGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 41322 | 0.66 | 0.647533 |
Target: 5'- gUCGUacGCcgagGUGU--UGGCCUCGAACUc -3' miRNA: 3'- gAGCG--CGa---CACGguACCGGAGCUUGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 60327 | 0.66 | 0.646453 |
Target: 5'- -cCGCGCUGUcaucaugcacaccGCCAgcGCgUCGGACUg -3' miRNA: 3'- gaGCGCGACA-------------CGGUacCGgAGCUUGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 53832 | 0.66 | 0.641056 |
Target: 5'- cCUCGaCGCaGUaGCCgAUGGCCgccaggcgcagcuccUCGAACUc -3' miRNA: 3'- -GAGC-GCGaCA-CGG-UACCGG---------------AGCUUGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 62413 | 0.66 | 0.641056 |
Target: 5'- cCUCGCGCUGcGCCcaggugcgcaguccgAaGGCCUCGu--- -3' miRNA: 3'- -GAGCGCGACaCGG---------------UaCCGGAGCuuga -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 14915 | 0.66 | 0.623777 |
Target: 5'- -aCGCGCUGgaggugguggcgGCCAU-GCCgUCGGGCa -3' miRNA: 3'- gaGCGCGACa-----------CGGUAcCGG-AGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 8597 | 0.67 | 0.604361 |
Target: 5'- -aCGCGC----CgGUGGCCUCGAACa -3' miRNA: 3'- gaGCGCGacacGgUACCGGAGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 3875 | 0.67 | 0.604361 |
Target: 5'- -cUGCGCaGUGCCAaGGCCUgGucaGACa -3' miRNA: 3'- gaGCGCGaCACGGUaCCGGAgC---UUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 5933 | 0.67 | 0.597904 |
Target: 5'- -cCGCGCUG-GCCAccgggcgguccaaccUGGCCgcgccggUGAGCg -3' miRNA: 3'- gaGCGCGACaCGGU---------------ACCGGa------GCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 19550 | 0.67 | 0.593604 |
Target: 5'- uUCGCGCUacGUGCCGUcaggcgGGUCcgaCGAGCa -3' miRNA: 3'- gAGCGCGA--CACGGUA------CCGGa--GCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 62936 | 0.67 | 0.582878 |
Target: 5'- cCUCGCGCgcacGUGC---GGCCUCcAGCUg -3' miRNA: 3'- -GAGCGCGa---CACGguaCCGGAGcUUGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 2164 | 0.67 | 0.582878 |
Target: 5'- aCUCgGCGUUGacgGUCAUGGCCcgCGAGgUg -3' miRNA: 3'- -GAG-CGCGACa--CGGUACCGGa-GCUUgA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 39362 | 0.67 | 0.580737 |
Target: 5'- uCUCGCGCUcUGCCGgugucacguccaGGCCaUCGAcCUg -3' miRNA: 3'- -GAGCGCGAcACGGUa-----------CCGG-AGCUuGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 46598 | 0.67 | 0.572191 |
Target: 5'- gCUgGCGUUgcGUGCCgGUGGCUUCGGGg- -3' miRNA: 3'- -GAgCGCGA--CACGG-UACCGGAGCUUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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