miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19257 5' -57.2 NC_004684.1 + 67065 0.66 0.658315
Target:  5'- uUCGCGCcguacccgGUGCgGgcguUGGCCUCGGcgGCc -3'
miRNA:   3'- gAGCGCGa-------CACGgU----ACCGGAGCU--UGa -5'
19257 5' -57.2 NC_004684.1 + 64403 0.7 0.411875
Target:  5'- --gGCGCg--GUgAUGGCCUCGAACc -3'
miRNA:   3'- gagCGCGacaCGgUACCGGAGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 64099 1.07 0.001082
Target:  5'- gCUCGCGCUGUGCCAUGGCCUCGAACUc -3'
miRNA:   3'- -GAGCGCGACACGGUACCGGAGCUUGA- -5'
19257 5' -57.2 NC_004684.1 + 64023 0.7 0.411875
Target:  5'- -cCGCGCUugaccucgGUGUCGgcggugucGGCCUCGAACa -3'
miRNA:   3'- gaGCGCGA--------CACGGUa-------CCGGAGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 63987 0.68 0.509311
Target:  5'- --gGUGCcaggGUGCCGuUGGUCUCGAugUg -3'
miRNA:   3'- gagCGCGa---CACGGU-ACCGGAGCUugA- -5'
19257 5' -57.2 NC_004684.1 + 62936 0.67 0.582878
Target:  5'- cCUCGCGCgcacGUGC---GGCCUCcAGCUg -3'
miRNA:   3'- -GAGCGCGa---CACGguaCCGGAGcUUGA- -5'
19257 5' -57.2 NC_004684.1 + 62413 0.66 0.641056
Target:  5'- cCUCGCGCUGcGCCcaggugcgcaguccgAaGGCCUCGu--- -3'
miRNA:   3'- -GAGCGCGACaCGG---------------UaCCGGAGCuuga -5'
19257 5' -57.2 NC_004684.1 + 62167 0.66 0.669074
Target:  5'- -gCGCGCggacaCCAUGGCCUCaccugGAGCa -3'
miRNA:   3'- gaGCGCGacac-GGUACCGGAG-----CUUGa -5'
19257 5' -57.2 NC_004684.1 + 62127 0.73 0.255527
Target:  5'- cCUUGCGCU---UgGUGGCCUCGAACUg -3'
miRNA:   3'- -GAGCGCGAcacGgUACCGGAGCUUGA- -5'
19257 5' -57.2 NC_004684.1 + 61525 0.67 0.560491
Target:  5'- gCUgGUGCUGcccggccUGCCAgucgcacgccUGGuCCUCGAACa -3'
miRNA:   3'- -GAgCGCGAC-------ACGGU----------ACC-GGAGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 60542 0.68 0.509311
Target:  5'- -cCGCGCccgGUGCCGUcgacacCCUCGAACUc -3'
miRNA:   3'- gaGCGCGa--CACGGUAcc----GGAGCUUGA- -5'
19257 5' -57.2 NC_004684.1 + 60327 0.66 0.646453
Target:  5'- -cCGCGCUGUcaucaugcacaccGCCAgcGCgUCGGACUg -3'
miRNA:   3'- gaGCGCGACA-------------CGGUacCGgAGCUUGA- -5'
19257 5' -57.2 NC_004684.1 + 57204 0.66 0.658315
Target:  5'- gCUgGCGCUGggcgGUC-UGGaacuCCUCGAGCg -3'
miRNA:   3'- -GAgCGCGACa---CGGuACC----GGAGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 55548 0.7 0.430455
Target:  5'- aCUCGCGCcgcUGgccGCCGUGGCC-CGGu-- -3'
miRNA:   3'- -GAGCGCG---ACa--CGGUACCGGaGCUuga -5'
19257 5' -57.2 NC_004684.1 + 55437 0.66 0.658315
Target:  5'- -gUGCGCcgcagGUGCCAggcuggcgaccaUGGCCagCGGACg -3'
miRNA:   3'- gaGCGCGa----CACGGU------------ACCGGa-GCUUGa -5'
19257 5' -57.2 NC_004684.1 + 55112 0.68 0.529989
Target:  5'- -gCGCGCUGcGCagcacgGGCCUCGAu-- -3'
miRNA:   3'- gaGCGCGACaCGgua---CCGGAGCUuga -5'
19257 5' -57.2 NC_004684.1 + 53832 0.66 0.641056
Target:  5'- cCUCGaCGCaGUaGCCgAUGGCCgccaggcgcagcuccUCGAACUc -3'
miRNA:   3'- -GAGC-GCGaCA-CGG-UACCGG---------------AGCUUGA- -5'
19257 5' -57.2 NC_004684.1 + 46598 0.67 0.572191
Target:  5'- gCUgGCGUUgcGUGCCgGUGGCUUCGGGg- -3'
miRNA:   3'- -GAgCGCGA--CACGG-UACCGGAGCUUga -5'
19257 5' -57.2 NC_004684.1 + 44670 0.72 0.311472
Target:  5'- gUCGCGC-GUGCCAgccacGGCCUUGGccACg -3'
miRNA:   3'- gAGCGCGaCACGGUa----CCGGAGCU--UGa -5'
19257 5' -57.2 NC_004684.1 + 41322 0.66 0.647533
Target:  5'- gUCGUacGCcgagGUGU--UGGCCUCGAACUc -3'
miRNA:   3'- gAGCG--CGa---CACGguACCGGAGCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.