miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 5' -57.2 NC_004684.1 + 39297 0.66 0.695076
Target:  5'- cCGCACCACCCGGuGCGGGucgcgcGGCg -3'
miRNA:   3'- -GUGUGGUGGGCU-UGCCCccucuaCUG- -5'
19258 5' -57.2 NC_004684.1 + 14113 0.66 0.695076
Target:  5'- -uCAgC-CCCGGugGGuGGGAgccGAUGACa -3'
miRNA:   3'- guGUgGuGGGCUugCC-CCCU---CUACUG- -5'
19258 5' -57.2 NC_004684.1 + 57043 0.66 0.695076
Target:  5'- gCGCAuguCCuCCCcGGCGGGGucGAUGGCg -3'
miRNA:   3'- -GUGU---GGuGGGcUUGCCCCcuCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 10457 0.66 0.695076
Target:  5'- uGCACCAguCCCGGGCGcgcuccaggcaGGaGGAcacGAUGGCg -3'
miRNA:   3'- gUGUGGU--GGGCUUGC-----------CC-CCU---CUACUG- -5'
19258 5' -57.2 NC_004684.1 + 21528 0.66 0.684521
Target:  5'- gACACCACcaCCGAGCuGGcGGuGGUGGa -3'
miRNA:   3'- gUGUGGUG--GGCUUGcCC-CCuCUACUg -5'
19258 5' -57.2 NC_004684.1 + 189 0.66 0.673919
Target:  5'- gUugACCugCCGAACGGc-GAGAccgUGACc -3'
miRNA:   3'- -GugUGGugGGCUUGCCccCUCU---ACUG- -5'
19258 5' -57.2 NC_004684.1 + 25970 0.66 0.673919
Target:  5'- cCGCACCACCgccACGGGGGAcgccaccgcGACg -3'
miRNA:   3'- -GUGUGGUGGgcuUGCCCCCUcua------CUG- -5'
19258 5' -57.2 NC_004684.1 + 38825 0.66 0.673919
Target:  5'- -cCGCCGCacaCCGGugGcGGGGuguuGGUGACc -3'
miRNA:   3'- guGUGGUG---GGCUugC-CCCCu---CUACUG- -5'
19258 5' -57.2 NC_004684.1 + 55026 0.66 0.656882
Target:  5'- aACACCGCCCccgguaagccaguuaGAcCGGGGGcGGUGu- -3'
miRNA:   3'- gUGUGGUGGG---------------CUuGCCCCCuCUACug -5'
19258 5' -57.2 NC_004684.1 + 40726 0.66 0.652612
Target:  5'- gACgACCAgCgCG-GCGGGGGcGGUGGCg -3'
miRNA:   3'- gUG-UGGUgG-GCuUGCCCCCuCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 29003 0.66 0.652612
Target:  5'- cCACGCCGCCgGuAGCGaucuuGGGAcuGGUGACc -3'
miRNA:   3'- -GUGUGGUGGgC-UUGCc----CCCU--CUACUG- -5'
19258 5' -57.2 NC_004684.1 + 9308 0.66 0.63872
Target:  5'- gGCGCUACCCcccgccgaggaacaGGACGGGGacGAGGaGGCc -3'
miRNA:   3'- gUGUGGUGGG--------------CUUGCCCC--CUCUaCUG- -5'
19258 5' -57.2 NC_004684.1 + 7967 0.67 0.631234
Target:  5'- aGCuCCACCCGGACGGacGGcaGGAgGACg -3'
miRNA:   3'- gUGuGGUGGGCUUGCCc-CC--UCUaCUG- -5'
19258 5' -57.2 NC_004684.1 + 46266 0.67 0.620542
Target:  5'- gACACCGCCgGAcacguggaACGGGGuGAccAUGACc -3'
miRNA:   3'- gUGUGGUGGgCU--------UGCCCC-CUc-UACUG- -5'
19258 5' -57.2 NC_004684.1 + 32891 0.67 0.620542
Target:  5'- gUACACCGCCCaauuuuCGGGGGuGuccucGGCg -3'
miRNA:   3'- -GUGUGGUGGGcuu---GCCCCCuCua---CUG- -5'
19258 5' -57.2 NC_004684.1 + 23551 0.67 0.620542
Target:  5'- uGCGCCugUCGuGCGGGGacGAGuaccUGGCg -3'
miRNA:   3'- gUGUGGugGGCuUGCCCC--CUCu---ACUG- -5'
19258 5' -57.2 NC_004684.1 + 13928 0.67 0.61413
Target:  5'- --aACCACCCGuuGccggugcugacacucGCGGGGGGcccucGGUGACg -3'
miRNA:   3'- gugUGGUGGGC--U---------------UGCCCCCU-----CUACUG- -5'
19258 5' -57.2 NC_004684.1 + 60754 0.68 0.582189
Target:  5'- --gGCCG-CCGggUGGGGGuuggucaggacuugaAGAUGGCg -3'
miRNA:   3'- gugUGGUgGGCuuGCCCCC---------------UCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 10817 0.68 0.567391
Target:  5'- --aGCUcCuuGAGgguguCGGGGGAGAUGGCg -3'
miRNA:   3'- gugUGGuGggCUU-----GCCCCCUCUACUG- -5'
19258 5' -57.2 NC_004684.1 + 22193 0.68 0.546425
Target:  5'- gCGCuGCCGCUgGAGCGcggcGGGGuGGUGGCc -3'
miRNA:   3'- -GUG-UGGUGGgCUUGC----CCCCuCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.