miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19259 5' -56.4 NC_004684.1 + 64495 1.14 0.000467
Target:  5'- uGGCCUCGUUCUGGAACGGCUGCCACCa -3'
miRNA:   3'- -CCGGAGCAAGACCUUGCCGACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 64969 0.83 0.073358
Target:  5'- cGGCCUUGUcgccggUCUGGAACGG-UGCCACg -3'
miRNA:   3'- -CCGGAGCA------AGACCUUGCCgACGGUGg -5'
19259 5' -56.4 NC_004684.1 + 47635 0.79 0.149904
Target:  5'- cGGCCUUGUcgUGGAcggccaguGCGGCguugGCCGCCu -3'
miRNA:   3'- -CCGGAGCAagACCU--------UGCCGa---CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 46949 0.78 0.171262
Target:  5'- -aCC-CGUUCgGGAugaugcaacgcaGCGGCUGCCACCa -3'
miRNA:   3'- ccGGaGCAAGaCCU------------UGCCGACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 29203 0.73 0.354012
Target:  5'- gGGUCUCGgUgUGGGACGGCaacgGCCAg- -3'
miRNA:   3'- -CCGGAGCaAgACCUUGCCGa---CGGUgg -5'
19259 5' -56.4 NC_004684.1 + 40411 0.73 0.354013
Target:  5'- cGCgCUCGcaccggcCUGGAugGCGGCguugGCCACCg -3'
miRNA:   3'- cCG-GAGCaa-----GACCU--UGCCGa---CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 31117 0.73 0.354013
Target:  5'- cGCCUCGUUCU----UGGCcagGCCGCCg -3'
miRNA:   3'- cCGGAGCAAGAccuuGCCGa--CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 64052 0.72 0.387949
Target:  5'- cGCCUgGaacgccgaaugcUUCUGGugcaguAGCGGCUcGCCACCg -3'
miRNA:   3'- cCGGAgC------------AAGACC------UUGCCGA-CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 22604 0.72 0.387949
Target:  5'- aGGCCUCGgUgaGGccguuACGGCgcugugggagGCCGCCg -3'
miRNA:   3'- -CCGGAGCaAgaCCu----UGCCGa---------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 26411 0.71 0.404801
Target:  5'- aGGCCUgcaagaugaugaaCGggauaccgcgCUGGAACGGCaGCCGCa -3'
miRNA:   3'- -CCGGA-------------GCaa--------GACCUUGCCGaCGGUGg -5'
19259 5' -56.4 NC_004684.1 + 31259 0.71 0.4057
Target:  5'- cGGCCUcCGggacacCUGGAaccgcaucgucgGCGGCUaCCGCCg -3'
miRNA:   3'- -CCGGA-GCaa----GACCU------------UGCCGAcGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 64237 0.71 0.423954
Target:  5'- uGGCCUCGgccaggcgCUGGGuguUGGC-GCaCACCa -3'
miRNA:   3'- -CCGGAGCaa------GACCUu--GCCGaCG-GUGG- -5'
19259 5' -56.4 NC_004684.1 + 59466 0.71 0.430459
Target:  5'- aGGCCUUGc-CUGGGuucuccaccggcugGCuGGCgGCCACCa -3'
miRNA:   3'- -CCGGAGCaaGACCU--------------UG-CCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 9856 0.71 0.433264
Target:  5'- cGGUCgCGcUCUGGA--GGCggGCCACCg -3'
miRNA:   3'- -CCGGaGCaAGACCUugCCGa-CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 18074 0.71 0.452233
Target:  5'- uGGCCgccgacgggUCGaucCUGG-ACGGCaagGCCACCg -3'
miRNA:   3'- -CCGG---------AGCaa-GACCuUGCCGa--CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 2134 0.7 0.461886
Target:  5'- uGCCggGUUCcugGGAGCGGCguuucugugGCCGCUc -3'
miRNA:   3'- cCGGagCAAGa--CCUUGCCGa--------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 15313 0.7 0.50153
Target:  5'- uGGCCggUGgcaUGGAGCgGGCguucaagGCCGCCg -3'
miRNA:   3'- -CCGGa-GCaagACCUUG-CCGa------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 60220 0.7 0.511677
Target:  5'- uGGCCUCGgcgUUguaGGugcacccgcaGGCGGUgGCCACCu -3'
miRNA:   3'- -CCGGAGCa--AGa--CC----------UUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 10316 0.7 0.511677
Target:  5'- cGGCCaccUCGUUCcaGGugGuGcCUGCCACCg -3'
miRNA:   3'- -CCGG---AGCAAGacCUugC-C-GACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 65430 0.69 0.532216
Target:  5'- aGGCgCU-GcgCUGGcguGCGGCgcgcgGCCACCg -3'
miRNA:   3'- -CCG-GAgCaaGACCu--UGCCGa----CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.