miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19259 5' -56.4 NC_004684.1 + 1228 0.69 0.553044
Target:  5'- cGGCCUCGgcggcCUGGu-CGGUcGCCcgGCCc -3'
miRNA:   3'- -CCGGAGCaa---GACCuuGCCGaCGG--UGG- -5'
19259 5' -56.4 NC_004684.1 + 1385 0.68 0.57411
Target:  5'- aGCUcCGgg-UGGGGCGGCgGCUACCg -3'
miRNA:   3'- cCGGaGCaagACCUUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 2042 0.67 0.648837
Target:  5'- cGCCcUGUUCgUGGAcuACGGCcagcGCCACg -3'
miRNA:   3'- cCGGaGCAAG-ACCU--UGCCGa---CGGUGg -5'
19259 5' -56.4 NC_004684.1 + 2134 0.7 0.461886
Target:  5'- uGCCggGUUCcugGGAGCGGCguuucugugGCCGCUc -3'
miRNA:   3'- cCGGagCAAGa--CCUUGCCGa--------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 2606 0.66 0.743329
Target:  5'- cGCCgacgcggaGUUCUGGAAgcaGGCgGUgGCCa -3'
miRNA:   3'- cCGGag------CAAGACCUUg--CCGaCGgUGG- -5'
19259 5' -56.4 NC_004684.1 + 4459 0.68 0.616719
Target:  5'- cGCCgCGcgCUGGu-CGGCUucGUCACCg -3'
miRNA:   3'- cCGGaGCaaGACCuuGCCGA--CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 4863 0.67 0.63492
Target:  5'- aGGUCUCGgagUGGuccauugaaGGCGGCUcaggcggccuggucGCCACCg -3'
miRNA:   3'- -CCGGAGCaagACC---------UUGCCGA--------------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 5015 0.66 0.701944
Target:  5'- uGGaCCU-GUggaUGGcAACGGUgGCCACCa -3'
miRNA:   3'- -CC-GGAgCAag-ACC-UUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 7489 0.67 0.638133
Target:  5'- uGGCCUgG--CUGGuugucuACGcGCUGgCCGCCg -3'
miRNA:   3'- -CCGGAgCaaGACCu-----UGC-CGAC-GGUGG- -5'
19259 5' -56.4 NC_004684.1 + 7563 0.66 0.701944
Target:  5'- cGGCCcCGgguggcgCUGGuGCGGCUGgUGCg -3'
miRNA:   3'- -CCGGaGCaa-----GACCuUGCCGACgGUGg -5'
19259 5' -56.4 NC_004684.1 + 9856 0.71 0.433264
Target:  5'- cGGUCgCGcUCUGGA--GGCggGCCACCg -3'
miRNA:   3'- -CCGGaGCaAGACCUugCCGa-CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 10316 0.7 0.511677
Target:  5'- cGGCCaccUCGUUCcaGGugGuGcCUGCCACCg -3'
miRNA:   3'- -CCGG---AGCAAGacCUugC-C-GACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 11944 0.68 0.606027
Target:  5'- uGGCCauggUCGccagcCUGGcaccuGCGGC-GCCACCg -3'
miRNA:   3'- -CCGG----AGCaa---GACCu----UGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 14467 0.68 0.606027
Target:  5'- cGCCUgc--CUGGAauGCGGCcacGCCGCCg -3'
miRNA:   3'- cCGGAgcaaGACCU--UGCCGa--CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 15017 0.67 0.638133
Target:  5'- cGCCUgGaucggCUGGGACGGCa-CCAUCg -3'
miRNA:   3'- cCGGAgCaa---GACCUUGCCGacGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 15080 0.66 0.712413
Target:  5'- cGGCCUUa-UC-GGcGCGGUgGCCGCCc -3'
miRNA:   3'- -CCGGAGcaAGaCCuUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 15313 0.7 0.50153
Target:  5'- uGGCCggUGgcaUGGAGCgGGCguucaagGCCGCCg -3'
miRNA:   3'- -CCGGa-GCaagACCUUG-CCGa------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 15667 0.68 0.57411
Target:  5'- aGGCCUCuccaacgUCgUGGccAGCGGCggcaccgacGCCACCg -3'
miRNA:   3'- -CCGGAGca-----AG-ACC--UUGCCGa--------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 18027 0.66 0.747385
Target:  5'- uGGCgUUGgaggUCUGGAccgGCGGCgaaggcgaggacgacUGCCcgguGCCg -3'
miRNA:   3'- -CCGgAGCa---AGACCU---UGCCG---------------ACGG----UGG- -5'
19259 5' -56.4 NC_004684.1 + 18074 0.71 0.452233
Target:  5'- uGGCCgccgacgggUCGaucCUGG-ACGGCaagGCCACCg -3'
miRNA:   3'- -CCGG---------AGCaa-GACCuUGCCGa--CGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.