miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19259 5' -56.4 NC_004684.1 + 49554 0.67 0.648837
Target:  5'- uGGCCgacuUCGggCUGGcgUGGCcuucGCCugCg -3'
miRNA:   3'- -CCGG----AGCaaGACCuuGCCGa---CGGugG- -5'
19259 5' -56.4 NC_004684.1 + 15667 0.68 0.57411
Target:  5'- aGGCCUCuccaacgUCgUGGccAGCGGCggcaccgacGCCACCg -3'
miRNA:   3'- -CCGGAGca-----AG-ACC--UUGCCGa--------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 47240 0.68 0.57411
Target:  5'- cGCCUCGggCgcgagGGuAGCGGCUGCgCGg- -3'
miRNA:   3'- cCGGAGCaaGa----CC-UUGCCGACG-GUgg -5'
19259 5' -56.4 NC_004684.1 + 60050 0.68 0.606027
Target:  5'- aGGCCUCGcacUCgUGGcgcGCGGCccgGCgGCCc -3'
miRNA:   3'- -CCGGAGCa--AG-ACCu--UGCCGa--CGgUGG- -5'
19259 5' -56.4 NC_004684.1 + 11944 0.68 0.606027
Target:  5'- uGGCCauggUCGccagcCUGGcaccuGCGGC-GCCACCg -3'
miRNA:   3'- -CCGG----AGCaa---GACCu----UGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 49122 0.68 0.616719
Target:  5'- cGGCgUCGgcCUGGAACGuaccGUCGCCg -3'
miRNA:   3'- -CCGgAGCaaGACCUUGCcga-CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 4863 0.67 0.63492
Target:  5'- aGGUCUCGgagUGGuccauugaaGGCGGCUcaggcggccuggucGCCACCg -3'
miRNA:   3'- -CCGGAGCaagACC---------UUGCCGA--------------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 7489 0.67 0.638133
Target:  5'- uGGCCUgG--CUGGuugucuACGcGCUGgCCGCCg -3'
miRNA:   3'- -CCGGAgCaaGACCu-----UGC-CGAC-GGUGG- -5'
19259 5' -56.4 NC_004684.1 + 27434 0.67 0.638133
Target:  5'- uGGUggCGgcaUUGGAGCGcGgUGCCACCa -3'
miRNA:   3'- -CCGgaGCaa-GACCUUGC-CgACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 1385 0.68 0.57411
Target:  5'- aGCUcCGgg-UGGGGCGGCgGCUACCg -3'
miRNA:   3'- cCGGaGCaagACCUUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 34147 0.69 0.563551
Target:  5'- cGCCUCGggC-GGcACGGUgcUGCuCACCg -3'
miRNA:   3'- cCGGAGCaaGaCCuUGCCG--ACG-GUGG- -5'
19259 5' -56.4 NC_004684.1 + 1228 0.69 0.553044
Target:  5'- cGGCCUCGgcggcCUGGu-CGGUcGCCcgGCCc -3'
miRNA:   3'- -CCGGAGCaa---GACCuuGCCGaCGG--UGG- -5'
19259 5' -56.4 NC_004684.1 + 47635 0.79 0.149904
Target:  5'- cGGCCUUGUcgUGGAcggccaguGCGGCguugGCCGCCu -3'
miRNA:   3'- -CCGGAGCAagACCU--------UGCCGa---CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 46949 0.78 0.171262
Target:  5'- -aCC-CGUUCgGGAugaugcaacgcaGCGGCUGCCACCa -3'
miRNA:   3'- ccGGaGCAAGaCCU------------UGCCGACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 29203 0.73 0.354012
Target:  5'- gGGUCUCGgUgUGGGACGGCaacgGCCAg- -3'
miRNA:   3'- -CCGGAGCaAgACCUUGCCGa---CGGUgg -5'
19259 5' -56.4 NC_004684.1 + 22604 0.72 0.387949
Target:  5'- aGGCCUCGgUgaGGccguuACGGCgcugugggagGCCGCCg -3'
miRNA:   3'- -CCGGAGCaAgaCCu----UGCCGa---------CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 31259 0.71 0.4057
Target:  5'- cGGCCUcCGggacacCUGGAaccgcaucgucgGCGGCUaCCGCCg -3'
miRNA:   3'- -CCGGA-GCaa----GACCU------------UGCCGAcGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 64237 0.71 0.423954
Target:  5'- uGGCCUCGgccaggcgCUGGGuguUGGC-GCaCACCa -3'
miRNA:   3'- -CCGGAGCaa------GACCUu--GCCGaCG-GUGG- -5'
19259 5' -56.4 NC_004684.1 + 60220 0.7 0.511677
Target:  5'- uGGCCUCGgcgUUguaGGugcacccgcaGGCGGUgGCCACCu -3'
miRNA:   3'- -CCGGAGCa--AGa--CC----------UUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 65430 0.69 0.532216
Target:  5'- aGGCgCU-GcgCUGGcguGCGGCgcgcgGCCACCg -3'
miRNA:   3'- -CCG-GAgCaaGACCu--UGCCGa----CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.