miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 3' -61.6 NC_004684.1 + 33816 0.66 0.483534
Target:  5'- uCGGCgUCGGcGG-G-CGGUgUGCCCGGCg -3'
miRNA:   3'- -GCUGgAGCC-CCaCgGUCA-GCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 21048 0.66 0.483534
Target:  5'- aGACC-CGugcacGGGUGCCGGUgcUGaCCgGGCa -3'
miRNA:   3'- gCUGGaGC-----CCCACGGUCA--GC-GGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 64030 0.66 0.482574
Target:  5'- uGACCUCGGugucggcGGUGUCGGccucgaacaccUCGUUgAGCg -3'
miRNA:   3'- gCUGGAGCC-------CCACGGUC-----------AGCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 63876 0.66 0.482574
Target:  5'- gCGGCCuucaUCGGgcccagcGGUGCCAgGUgGUCCAGg -3'
miRNA:   3'- -GCUGG----AGCC-------CCACGGU-CAgCGGGUCg -5'
19261 3' -61.6 NC_004684.1 + 20348 0.66 0.476834
Target:  5'- uCGGCCUCcggguGGGGcggcuacugcgaagGCCAGUCGuuccccgacggcaCCCGGUu -3'
miRNA:   3'- -GCUGGAG-----CCCCa-------------CGGUCAGC-------------GGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 67090 0.66 0.474929
Target:  5'- uGGCCUCGGcGGccagcgaacucuugUGCCAGgugugcacgaaggccUCGCCguCGGCc -3'
miRNA:   3'- gCUGGAGCC-CC--------------ACGGUC---------------AGCGG--GUCG- -5'
19261 3' -61.6 NC_004684.1 + 51731 0.66 0.473977
Target:  5'- aCGACgUUGGagagGCCuaccucguAGUCGUCCAGCa -3'
miRNA:   3'- -GCUGgAGCCcca-CGG--------UCAGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 57820 0.66 0.473977
Target:  5'- aCGGCCUgguccCGGcGGUGCUGGcCG-CCGGUa -3'
miRNA:   3'- -GCUGGA-----GCC-CCACGGUCaGCgGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 40377 0.66 0.473977
Target:  5'- gGGCCUCGGcGGUGgCGGcC-UUCGGCa -3'
miRNA:   3'- gCUGGAGCC-CCACgGUCaGcGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 33178 0.66 0.473977
Target:  5'- uCGACCUCGGcaaGGUcgucaccgugGCCAuGgcgacggacaGCCCGGCg -3'
miRNA:   3'- -GCUGGAGCC---CCA----------CGGU-Cag--------CGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 62233 0.66 0.473977
Target:  5'- uCGACaUCGGGGUagcgcgGCUGGUCcuGCCC-GCu -3'
miRNA:   3'- -GCUGgAGCCCCA------CGGUCAG--CGGGuCG- -5'
19261 3' -61.6 NC_004684.1 + 51635 0.66 0.473977
Target:  5'- gCGcACCuuUCGGuGUacgcgGCCAGUCGCUgGGCa -3'
miRNA:   3'- -GC-UGG--AGCCcCA-----CGGUCAGCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 3651 0.66 0.464515
Target:  5'- uGGCCgcccGGUGCCgggucaucguacGGUgGCCCGGCa -3'
miRNA:   3'- gCUGGagccCCACGG------------UCAgCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 24505 0.66 0.464515
Target:  5'- gCGGUCUCGG--UGCCAGagGCCgGGCg -3'
miRNA:   3'- -GCUGGAGCCccACGGUCagCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 7297 0.66 0.464515
Target:  5'- aGaACUUCGGGGUGgcCCGGUgaagGCCC-GCa -3'
miRNA:   3'- gC-UGGAGCCCCAC--GGUCAg---CGGGuCG- -5'
19261 3' -61.6 NC_004684.1 + 57019 0.66 0.463574
Target:  5'- -cGCCaUCGGGGUGCgcugguCGGUCacggugggccacgGCaCCAGCg -3'
miRNA:   3'- gcUGG-AGCCCCACG------GUCAG-------------CG-GGUCG- -5'
19261 3' -61.6 NC_004684.1 + 20310 0.66 0.455153
Target:  5'- cCGACaccauggCGGcGGcgGCCAucgagaucggcGUCGCCCGGUg -3'
miRNA:   3'- -GCUGga-----GCC-CCa-CGGU-----------CAGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 29819 0.66 0.455153
Target:  5'- -cACCcUGGuGGUGCCAGagGauaCCCAGCu -3'
miRNA:   3'- gcUGGaGCC-CCACGGUCagC---GGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 65032 0.66 0.455153
Target:  5'- gCGACCUCGuGGcUGa-GGUCGuCCCAGg -3'
miRNA:   3'- -GCUGGAGC-CCcACggUCAGC-GGGUCg -5'
19261 3' -61.6 NC_004684.1 + 51886 0.66 0.455153
Target:  5'- cCGGCCcCGGGG-GCC--UUGUCCAGg -3'
miRNA:   3'- -GCUGGaGCCCCaCGGucAGCGGGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.