miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 5' -57.6 NC_004684.1 + 67010 1.08 0.000948
Target:  5'- gGCGGUGAUCCUGACCGGCACCACGAUg -3'
miRNA:   3'- -CGCCACUAGGACUGGCCGUGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 4197 0.74 0.235113
Target:  5'- cGCGGUGGUUCUGAUCaccGCcaGCCACGAc -3'
miRNA:   3'- -CGCCACUAGGACUGGc--CG--UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 6568 0.73 0.28699
Target:  5'- aCGGUGAgUCCgUGuCCGGCACCugGu- -3'
miRNA:   3'- cGCCACU-AGG-ACuGGCCGUGGugCua -5'
19261 5' -57.6 NC_004684.1 + 64938 0.72 0.294074
Target:  5'- gGCGGUGAgcgCCUGGCgGGCggugGCC-CGGUu -3'
miRNA:   3'- -CGCCACUa--GGACUGgCCG----UGGuGCUA- -5'
19261 5' -57.6 NC_004684.1 + 11274 0.72 0.308648
Target:  5'- aCGGUGAUgagcgcggagCUGAUCGGCACCACGc- -3'
miRNA:   3'- cGCCACUAg---------GACUGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 55606 0.72 0.331532
Target:  5'- aCGGUGG-CCUGGUCGGC-CCACGGg -3'
miRNA:   3'- cGCCACUaGGACUGGCCGuGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 13652 0.72 0.331532
Target:  5'- uCGGUGuUCCUGGCCgucgaacccGGCACCAUGc- -3'
miRNA:   3'- cGCCACuAGGACUGG---------CCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 9928 0.71 0.339432
Target:  5'- gGCGGUGAUUgUGGCCGGgCugACCAUGc- -3'
miRNA:   3'- -CGCCACUAGgACUGGCC-G--UGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 20218 0.71 0.35564
Target:  5'- aGCGGcGGcCCUGGCCGcCGCUACGGUg -3'
miRNA:   3'- -CGCCaCUaGGACUGGCcGUGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 16179 0.7 0.389656
Target:  5'- -aGGUGAUCCUG-CUGGC--CACGAUg -3'
miRNA:   3'- cgCCACUAGGACuGGCCGugGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 25899 0.7 0.398486
Target:  5'- aGCGGUGA-CCUGcuguCCGGCAUCAgCGc- -3'
miRNA:   3'- -CGCCACUaGGACu---GGCCGUGGU-GCua -5'
19261 5' -57.6 NC_004684.1 + 13966 0.7 0.398487
Target:  5'- uCGGUGAcgUCCUGACgcaGGCagACCugGAg -3'
miRNA:   3'- cGCCACU--AGGACUGg--CCG--UGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 15538 0.7 0.416527
Target:  5'- gGCGcUGAUCCgcguuggugGACCGGCgACCAuCGAg -3'
miRNA:   3'- -CGCcACUAGGa--------CUGGCCG-UGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 7313 0.7 0.422036
Target:  5'- cCGGUGAaggcccgcacgggCCgccgGGCCGcGCGCCACGAg -3'
miRNA:   3'- cGCCACUa------------GGa---CUGGC-CGUGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 49027 0.7 0.425733
Target:  5'- cCGGUGAUgUcGAgCGGCACCGCGc- -3'
miRNA:   3'- cGCCACUAgGaCUgGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 53773 0.69 0.435058
Target:  5'- gGUGGUcgGGUCCcaGACCGGCGCgGCGc- -3'
miRNA:   3'- -CGCCA--CUAGGa-CUGGCCGUGgUGCua -5'
19261 5' -57.6 NC_004684.1 + 7516 0.69 0.435059
Target:  5'- cGgGGUGGaCCUGcCCGGCACCGa--- -3'
miRNA:   3'- -CgCCACUaGGACuGGCCGUGGUgcua -5'
19261 5' -57.6 NC_004684.1 + 21060 0.69 0.444501
Target:  5'- -gGGUGccgGUgCUGACCgGGCACCugGGc -3'
miRNA:   3'- cgCCAC---UAgGACUGG-CCGUGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 7605 0.69 0.462753
Target:  5'- gGCGGUGuucgccUCCUGGCCGGUcgagagccagcucGCCgugGCGGg -3'
miRNA:   3'- -CGCCACu-----AGGACUGGCCG-------------UGG---UGCUa -5'
19261 5' -57.6 NC_004684.1 + 27802 0.69 0.463725
Target:  5'- gGCGGUucGGUCCUGGCCuGCuCCugGu- -3'
miRNA:   3'- -CGCCA--CUAGGACUGGcCGuGGugCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.