miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 5' -57.6 NC_004684.1 + 4197 0.74 0.235113
Target:  5'- cGCGGUGGUUCUGAUCaccGCcaGCCACGAc -3'
miRNA:   3'- -CGCCACUAGGACUGGc--CG--UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 5904 0.67 0.607944
Target:  5'- gGCGGcgcUGAUCgCgcacGACCGGCugGCCGCGc- -3'
miRNA:   3'- -CGCC---ACUAG-Ga---CUGGCCG--UGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 6568 0.73 0.28699
Target:  5'- aCGGUGAgUCCgUGuCCGGCACCugGu- -3'
miRNA:   3'- cGCCACU-AGG-ACuGGCCGUGGugCua -5'
19261 5' -57.6 NC_004684.1 + 7313 0.7 0.422036
Target:  5'- cCGGUGAaggcccgcacgggCCgccgGGCCGcGCGCCACGAg -3'
miRNA:   3'- cGCCACUa------------GGa---CUGGC-CGUGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 7516 0.69 0.435059
Target:  5'- cGgGGUGGaCCUGcCCGGCACCGa--- -3'
miRNA:   3'- -CgCCACUaGGACuGGCCGUGGUgcua -5'
19261 5' -57.6 NC_004684.1 + 7552 0.67 0.586636
Target:  5'- gGCGGcguucUGGUUCgccuacACCGGCACCGCGc- -3'
miRNA:   3'- -CGCC-----ACUAGGac----UGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 7605 0.69 0.462753
Target:  5'- gGCGGUGuucgccUCCUGGCCGGUcgagagccagcucGCCgugGCGGg -3'
miRNA:   3'- -CGCCACu-----AGGACUGGCCG-------------UGG---UGCUa -5'
19261 5' -57.6 NC_004684.1 + 7929 0.67 0.597276
Target:  5'- gGUGGUGGacaucgCCgccGACCGGCGCaCACcGGUg -3'
miRNA:   3'- -CGCCACUa-----GGa--CUGGCCGUG-GUG-CUA- -5'
19261 5' -57.6 NC_004684.1 + 9541 0.67 0.586636
Target:  5'- aGCuGGUGcgCCgguugGAgCCGGUgcGCCGCGAa -3'
miRNA:   3'- -CG-CCACuaGGa----CU-GGCCG--UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 9928 0.71 0.339432
Target:  5'- gGCGGUGAUUgUGGCCGGgCugACCAUGc- -3'
miRNA:   3'- -CGCCACUAGgACUGGCC-G--UGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 11274 0.72 0.308648
Target:  5'- aCGGUGAUgagcgcggagCUGAUCGGCACCACGc- -3'
miRNA:   3'- cGCCACUAg---------GACUGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 11598 0.68 0.544511
Target:  5'- cCGGUGcgCCUGGacgaCGGCACCGa--- -3'
miRNA:   3'- cGCCACuaGGACUg---GCCGUGGUgcua -5'
19261 5' -57.6 NC_004684.1 + 13652 0.72 0.331532
Target:  5'- uCGGUGuUCCUGGCCgucgaacccGGCACCAUGc- -3'
miRNA:   3'- cGCCACuAGGACUGG---------CCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 13966 0.7 0.398487
Target:  5'- uCGGUGAcgUCCUGACgcaGGCagACCugGAg -3'
miRNA:   3'- cGCCACU--AGGACUGg--CCG--UGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 14483 0.66 0.650726
Target:  5'- -aGGUGGUU---GCCGGUACCACGc- -3'
miRNA:   3'- cgCCACUAGgacUGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 14524 0.66 0.618631
Target:  5'- aCGGUGAcCCUGGCCuaacuGGCcgaccGCUACGGa -3'
miRNA:   3'- cGCCACUaGGACUGG-----CCG-----UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 15025 0.67 0.576032
Target:  5'- aGCGG-GAguucgCC-GACCGGCuCCugGAc -3'
miRNA:   3'- -CGCCaCUa----GGaCUGGCCGuGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 15538 0.7 0.416527
Target:  5'- gGCGcUGAUCCgcguuggugGACCGGCgACCAuCGAg -3'
miRNA:   3'- -CGCcACUAGGa--------CUGGCCG-UGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 16179 0.7 0.389656
Target:  5'- -aGGUGAUCCUG-CUGGC--CACGAUg -3'
miRNA:   3'- cgCCACUAGGACuGGCCGugGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 17994 0.67 0.554963
Target:  5'- gGUGGUGG-CgCUGACCGaGUACgGCGGc -3'
miRNA:   3'- -CGCCACUaG-GACUGGC-CGUGgUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.