miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 5' -57.6 NC_004684.1 + 35716 0.66 0.62933
Target:  5'- aCGGUGA-CCUGACCuGGUucaacaacACCAgCGAc -3'
miRNA:   3'- cGCCACUaGGACUGG-CCG--------UGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 11598 0.68 0.544511
Target:  5'- cCGGUGcgCCUGGacgaCGGCACCGa--- -3'
miRNA:   3'- cGCCACuaGGACUg---GCCGUGGUgcua -5'
19261 5' -57.6 NC_004684.1 + 15025 0.67 0.576032
Target:  5'- aGCGG-GAguucgCC-GACCGGCuCCugGAc -3'
miRNA:   3'- -CGCCaCUa----GGaCUGGCCGuGGugCUa -5'
19261 5' -57.6 NC_004684.1 + 40714 0.67 0.576032
Target:  5'- gGCGGUGG-CCgggacGACCaGCGCgGCGGg -3'
miRNA:   3'- -CGCCACUaGGa----CUGGcCGUGgUGCUa -5'
19261 5' -57.6 NC_004684.1 + 9541 0.67 0.586636
Target:  5'- aGCuGGUGcgCCgguugGAgCCGGUgcGCCGCGAa -3'
miRNA:   3'- -CG-CCACuaGGa----CU-GGCCG--UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 20232 0.67 0.586636
Target:  5'- -gGGUGcgCCUGgcgcGCCGGUACUACu-- -3'
miRNA:   3'- cgCCACuaGGAC----UGGCCGUGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 46698 0.67 0.586636
Target:  5'- uGCGGUGGcgcgcCCUGugCGagcGCGCCAcCGAc -3'
miRNA:   3'- -CGCCACUa----GGACugGC---CGUGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 5904 0.67 0.607944
Target:  5'- gGCGGcgcUGAUCgCgcacGACCGGCugGCCGCGc- -3'
miRNA:   3'- -CGCC---ACUAG-Ga---CUGGCCG--UGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 14524 0.66 0.618631
Target:  5'- aCGGUGAcCCUGGCCuaacuGGCcgaccGCUACGGa -3'
miRNA:   3'- cGCCACUaGGACUGG-----CCG-----UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 36108 0.68 0.534124
Target:  5'- cGCGGUGGgugcgCCUG-CUGGCcuucGCCACa-- -3'
miRNA:   3'- -CGCCACUa----GGACuGGCCG----UGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 19998 0.68 0.522782
Target:  5'- cCGGUGGUCCUGugaccgcACCGGagGCCGUGGUg -3'
miRNA:   3'- cGCCACUAGGAC-------UGGCCg-UGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 27802 0.69 0.463725
Target:  5'- gGCGGUucGGUCCUGGCCuGCuCCugGu- -3'
miRNA:   3'- -CGCCA--CUAGGACUGGcCGuGGugCua -5'
19261 5' -57.6 NC_004684.1 + 4197 0.74 0.235113
Target:  5'- cGCGGUGGUUCUGAUCaccGCcaGCCACGAc -3'
miRNA:   3'- -CGCCACUAGGACUGGc--CG--UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 64938 0.72 0.294074
Target:  5'- gGCGGUGAgcgCCUGGCgGGCggugGCC-CGGUu -3'
miRNA:   3'- -CGCCACUa--GGACUGgCCG----UGGuGCUA- -5'
19261 5' -57.6 NC_004684.1 + 11274 0.72 0.308648
Target:  5'- aCGGUGAUgagcgcggagCUGAUCGGCACCACGc- -3'
miRNA:   3'- cGCCACUAg---------GACUGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 9928 0.71 0.339432
Target:  5'- gGCGGUGAUUgUGGCCGGgCugACCAUGc- -3'
miRNA:   3'- -CGCCACUAGgACUGGCC-G--UGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 25899 0.7 0.398486
Target:  5'- aGCGGUGA-CCUGcuguCCGGCAUCAgCGc- -3'
miRNA:   3'- -CGCCACUaGGACu---GGCCGUGGU-GCua -5'
19261 5' -57.6 NC_004684.1 + 15538 0.7 0.416527
Target:  5'- gGCGcUGAUCCgcguuggugGACCGGCgACCAuCGAg -3'
miRNA:   3'- -CGCcACUAGGa--------CUGGCCG-UGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 53773 0.69 0.435058
Target:  5'- gGUGGUcgGGUCCcaGACCGGCGCgGCGc- -3'
miRNA:   3'- -CGCCA--CUAGGa-CUGGCCGUGgUGCua -5'
19261 5' -57.6 NC_004684.1 + 21060 0.69 0.444501
Target:  5'- -gGGUGccgGUgCUGACCgGGCACCugGGc -3'
miRNA:   3'- cgCCAC---UAgGACUGG-CCGUGGugCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.