miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19262 3' -52.9 NC_004684.1 + 40301 0.66 0.901228
Target:  5'- -uCGGUaccGAUCuG-GGCGGCGAUGUccACGc -3'
miRNA:   3'- guGCUA---CUAG-CaCCGCCGCUACA--UGC- -5'
19262 3' -52.9 NC_004684.1 + 58745 0.66 0.901228
Target:  5'- gCACGcAUGAUCGcguugcccUGGCGGUGGcUGcacUGCGc -3'
miRNA:   3'- -GUGC-UACUAGC--------ACCGCCGCU-AC---AUGC- -5'
19262 3' -52.9 NC_004684.1 + 46168 0.66 0.901228
Target:  5'- uGCGGUacAUCGUGGCGGUGAa----- -3'
miRNA:   3'- gUGCUAc-UAGCACCGCCGCUacaugc -5'
19262 3' -52.9 NC_004684.1 + 9665 0.66 0.901228
Target:  5'- gGCGGUGAa----GCGcGCGGUGUACGg -3'
miRNA:   3'- gUGCUACUagcacCGC-CGCUACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 10901 0.66 0.901228
Target:  5'- aCGCGGUGAUCGcgcUGGuCGGUGAa----- -3'
miRNA:   3'- -GUGCUACUAGC---ACC-GCCGCUacaugc -5'
19262 3' -52.9 NC_004684.1 + 30860 0.66 0.894296
Target:  5'- gCGCGGUGAc---GGCaGGCGAUGUGUGg -3'
miRNA:   3'- -GUGCUACUagcaCCG-CCGCUACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 28058 0.66 0.879651
Target:  5'- -cCGGUGGUCGgcccCGGCGGUGUGg- -3'
miRNA:   3'- guGCUACUAGCacc-GCCGCUACAUgc -5'
19262 3' -52.9 NC_004684.1 + 9372 0.66 0.879651
Target:  5'- gGCGAaaUGGUCGgccuCGGCGAaGUACGc -3'
miRNA:   3'- gUGCU--ACUAGCacc-GCCGCUaCAUGC- -5'
19262 3' -52.9 NC_004684.1 + 30218 0.66 0.875059
Target:  5'- cCAUGGUGAUCGgggaGGCGGCccccgaacccaccaaGGUG-GCGc -3'
miRNA:   3'- -GUGCUACUAGCa---CCGCCG---------------CUACaUGC- -5'
19262 3' -52.9 NC_004684.1 + 53884 0.66 0.871948
Target:  5'- uGCGGUGccuucUCGUGGgGGUGGuUGUgACGg -3'
miRNA:   3'- gUGCUACu----AGCACCgCCGCU-ACA-UGC- -5'
19262 3' -52.9 NC_004684.1 + 40738 0.67 0.864
Target:  5'- gGCGggGGcgGUGGCGGUGGUGUu-- -3'
miRNA:   3'- gUGCuaCUagCACCGCCGCUACAugc -5'
19262 3' -52.9 NC_004684.1 + 59458 0.67 0.864
Target:  5'- uGCGccGGUC--GGCGGCGAUGUccaccaccugcGCGg -3'
miRNA:   3'- gUGCuaCUAGcaCCGCCGCUACA-----------UGC- -5'
19262 3' -52.9 NC_004684.1 + 46687 0.67 0.864
Target:  5'- uGCGGUGG-CGgugcGGUGGCGcgcccUGUGCGa -3'
miRNA:   3'- gUGCUACUaGCa---CCGCCGCu----ACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 33356 0.67 0.864
Target:  5'- --aGAUGAcCGagGGCGGUG-UGUACGc -3'
miRNA:   3'- gugCUACUaGCa-CCGCCGCuACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 35652 0.67 0.855813
Target:  5'- gACGuacagGGcCGUcGGCGGCGGUGUGuCGc -3'
miRNA:   3'- gUGCua---CUaGCA-CCGCCGCUACAU-GC- -5'
19262 3' -52.9 NC_004684.1 + 60847 0.67 0.847395
Target:  5'- -uCGAUG-UCcacGGCGGCGAUGU-CGg -3'
miRNA:   3'- guGCUACuAGca-CCGCCGCUACAuGC- -5'
19262 3' -52.9 NC_004684.1 + 56146 0.67 0.846541
Target:  5'- aACGAUGAgCGUGGCccuggccgacgacGGCGAcg-ACGg -3'
miRNA:   3'- gUGCUACUaGCACCG-------------CCGCUacaUGC- -5'
19262 3' -52.9 NC_004684.1 + 32555 0.67 0.842237
Target:  5'- gGCGAUGAccuggagauUCG-GGCGGUcggcucgcucuacaaGGUGUACa -3'
miRNA:   3'- gUGCUACU---------AGCaCCGCCG---------------CUACAUGc -5'
19262 3' -52.9 NC_004684.1 + 33810 0.67 0.838754
Target:  5'- aGCGGUucggCGUcGGCgGGCGGUGUGCc -3'
miRNA:   3'- gUGCUAcua-GCA-CCG-CCGCUACAUGc -5'
19262 3' -52.9 NC_004684.1 + 32871 0.67 0.829898
Target:  5'- gCAUGA-GAUCG-GGUGGUGGgcgGUGCu -3'
miRNA:   3'- -GUGCUaCUAGCaCCGCCGCUa--CAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.