miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19262 3' -52.9 NC_004684.1 + 67150 1.1 0.002264
Target:  5'- gCACGAUGAUCGUGGCGGCGAUGUACGg -3'
miRNA:   3'- -GUGCUACUAGCACCGCCGCUACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 64920 0.7 0.710537
Target:  5'- gGCGgcGAcccagGUGGCGGCGGUGaGCGc -3'
miRNA:   3'- gUGCuaCUag---CACCGCCGCUACaUGC- -5'
19262 3' -52.9 NC_004684.1 + 64851 0.71 0.612725
Target:  5'- gGCgGGUGGUUGUGGUGGgGG-GUGCGc -3'
miRNA:   3'- gUG-CUACUAGCACCGCCgCUaCAUGC- -5'
19262 3' -52.9 NC_004684.1 + 63177 0.68 0.772792
Target:  5'- gGCGcAUGcaGUCGUGGCuGGCGGUGa--- -3'
miRNA:   3'- gUGC-UAC--UAGCACCG-CCGCUACaugc -5'
19262 3' -52.9 NC_004684.1 + 63133 0.8 0.22613
Target:  5'- gGCGAUGGUgGUGGUGGcCGA-GUGCGg -3'
miRNA:   3'- gUGCUACUAgCACCGCC-GCUaCAUGC- -5'
19262 3' -52.9 NC_004684.1 + 60847 0.67 0.847395
Target:  5'- -uCGAUG-UCcacGGCGGCGAUGU-CGg -3'
miRNA:   3'- guGCUACuAGca-CCGCCGCUACAuGC- -5'
19262 3' -52.9 NC_004684.1 + 59458 0.67 0.864
Target:  5'- uGCGccGGUC--GGCGGCGAUGUccaccaccugcGCGg -3'
miRNA:   3'- gUGCuaCUAGcaCCGCCGCUACA-----------UGC- -5'
19262 3' -52.9 NC_004684.1 + 58891 0.72 0.558491
Target:  5'- gGCGAUGGUCuUGGUGGUGcgG-ACGa -3'
miRNA:   3'- gUGCUACUAGcACCGCCGCuaCaUGC- -5'
19262 3' -52.9 NC_004684.1 + 58745 0.66 0.901228
Target:  5'- gCACGcAUGAUCGcguugcccUGGCGGUGGcUGcacUGCGc -3'
miRNA:   3'- -GUGC-UACUAGC--------ACCGCCGCU-AC---AUGC- -5'
19262 3' -52.9 NC_004684.1 + 57139 0.69 0.76271
Target:  5'- gCGCGGcUGGuUCGccuccaUGGCGGCGGUGgcCGa -3'
miRNA:   3'- -GUGCU-ACU-AGC------ACCGCCGCUACauGC- -5'
19262 3' -52.9 NC_004684.1 + 56146 0.67 0.846541
Target:  5'- aACGAUGAgCGUGGCccuggccgacgacGGCGAcg-ACGg -3'
miRNA:   3'- gUGCUACUaGCACCG-------------CCGCUacaUGC- -5'
19262 3' -52.9 NC_004684.1 + 53884 0.66 0.871948
Target:  5'- uGCGGUGccuucUCGUGGgGGUGGuUGUgACGg -3'
miRNA:   3'- gUGCUACu----AGCACCgCCGCU-ACA-UGC- -5'
19262 3' -52.9 NC_004684.1 + 47949 0.69 0.721169
Target:  5'- -uUGGUGGcgUCGgcacGGCuGGCGGUGUACGc -3'
miRNA:   3'- guGCUACU--AGCa---CCG-CCGCUACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 46687 0.67 0.864
Target:  5'- uGCGGUGG-CGgugcGGUGGCGcgcccUGUGCGa -3'
miRNA:   3'- gUGCUACUaGCa---CCGCCGCu----ACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 46345 0.72 0.569253
Target:  5'- aCACGAUGGgagCGUGGUGGUcGUcGUGCu -3'
miRNA:   3'- -GUGCUACUa--GCACCGCCGcUA-CAUGc -5'
19262 3' -52.9 NC_004684.1 + 46168 0.66 0.901228
Target:  5'- uGCGGUacAUCGUGGCGGUGAa----- -3'
miRNA:   3'- gUGCUAc-UAGCACCGCCGCUacaugc -5'
19262 3' -52.9 NC_004684.1 + 45301 0.68 0.802135
Target:  5'- uCGCGcUG-UCGuUGGCGGCGc-GUGCGg -3'
miRNA:   3'- -GUGCuACuAGC-ACCGCCGCuaCAUGC- -5'
19262 3' -52.9 NC_004684.1 + 43796 0.68 0.792515
Target:  5'- gCGCgGGUGAUaccaccGGCGGCGGUGUucgcGCGg -3'
miRNA:   3'- -GUG-CUACUAgca---CCGCCGCUACA----UGC- -5'
19262 3' -52.9 NC_004684.1 + 42484 0.67 0.829897
Target:  5'- gCGCGcUGAUCGcGGCGGCGGc----- -3'
miRNA:   3'- -GUGCuACUAGCaCCGCCGCUacaugc -5'
19262 3' -52.9 NC_004684.1 + 41413 0.77 0.329989
Target:  5'- uCGCGGUGGcguccccCGUGGCGGUGGUGcgGCGg -3'
miRNA:   3'- -GUGCUACUa------GCACCGCCGCUACa-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.