miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 69593 1.1 0.000229
Target:  5'- gUCCACGCCAACAGGCCCCCGGCACCCc -3'
miRNA:   3'- -AGGUGCGGUUGUCCGGGGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 67246 0.82 0.033595
Target:  5'- aCCGCGCCGucgaACAGGCCaCCGGCGgCCg -3'
miRNA:   3'- aGGUGCGGU----UGUCCGGgGGCCGUgGG- -5'
19263 5' -62.8 NC_004685.1 + 12863 0.78 0.059624
Target:  5'- gCCACGaCGGCGGGCagaCCUGGCAUCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGg--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 23511 0.78 0.066441
Target:  5'- aUCGCGCCcgacGCGGGCgaCCCCGGuCACCCc -3'
miRNA:   3'- aGGUGCGGu---UGUCCG--GGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 30298 0.76 0.080216
Target:  5'- aCCugGCCuccgGCGcGGUUCCCGGCACCa -3'
miRNA:   3'- aGGugCGGu---UGU-CCGGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 27854 0.76 0.084629
Target:  5'- gUCCGCGCgGAgGGucGCCCUCGGC-CCCa -3'
miRNA:   3'- -AGGUGCGgUUgUC--CGGGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 38847 0.76 0.084629
Target:  5'- gCCGCGCCGGuCGGuGCCCgCGGUgccACCCa -3'
miRNA:   3'- aGGUGCGGUU-GUC-CGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 53236 0.76 0.089273
Target:  5'- gUCGCGCCgGGCAGGCCUaccagaaacggCGGCACCCc -3'
miRNA:   3'- aGGUGCGG-UUGUCCGGGg----------GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 67445 0.75 0.099297
Target:  5'- cCCG-GCCGggcgGCAGGCaggucuggcaCCCGGCACCCa -3'
miRNA:   3'- aGGUgCGGU----UGUCCGg---------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 27223 0.75 0.101964
Target:  5'- gCCGCuGCC--CAGGCCgUUGGCACCCg -3'
miRNA:   3'- aGGUG-CGGuuGUCCGGgGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 60703 0.75 0.107502
Target:  5'- uUCCACacCCGGCuGaCCCUCGGCGCCCa -3'
miRNA:   3'- -AGGUGc-GGUUGuCcGGGGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 32080 0.74 0.116341
Target:  5'- aCCG-GCgGGCAGGuuCCCCCGGgCACCCc -3'
miRNA:   3'- aGGUgCGgUUGUCC--GGGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 16318 0.73 0.139297
Target:  5'- -gCugGCCAGCAucgccgcGGCCaCCGGCGCCg -3'
miRNA:   3'- agGugCGGUUGU-------CCGGgGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 19116 0.73 0.143321
Target:  5'- gCCGCGCUGG-AGGCggCgCCGGCGCCCa -3'
miRNA:   3'- aGGUGCGGUUgUCCG--GgGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 37406 0.73 0.147071
Target:  5'- gCCGCGCCAcCAGGaCCgCCC-GCGCCa -3'
miRNA:   3'- aGGUGCGGUuGUCC-GG-GGGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 23930 0.73 0.147071
Target:  5'- aCCGCGCagcgAACAcGcGCCgCCCGGCgACCCg -3'
miRNA:   3'- aGGUGCGg---UUGU-C-CGG-GGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 48141 0.73 0.15091
Target:  5'- cUCAUGCCGGCAccaCCCCGGCugGCCCg -3'
miRNA:   3'- aGGUGCGGUUGUccgGGGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 31727 0.73 0.15091
Target:  5'- aUCCACGCCuuCGGGCaCCguguaggugCCGGCcagcuccgaccACCCg -3'
miRNA:   3'- -AGGUGCGGuuGUCCG-GG---------GGCCG-----------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 6428 0.72 0.154443
Target:  5'- gCgGCGCCAaggGCAucaccuGGCCcgaacagCCCGGCACCCc -3'
miRNA:   3'- aGgUGCGGU---UGU------CCGG-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 11143 0.72 0.162979
Target:  5'- gCCgACGCCAccaACGGGUUCaCCGGCGCUg -3'
miRNA:   3'- aGG-UGCGGU---UGUCCGGG-GGCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.