miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 8562 0.69 0.254946
Target:  5'- gUCUGCGCCuguuuCGGguGCCgCCCGGCACgCu -3'
miRNA:   3'- -AGGUGCGGuu---GUC--CGG-GGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 48770 0.71 0.185029
Target:  5'- cCCAgcauguCGCCAAUcucgauGGGCUcaCCCGGCACCUu -3'
miRNA:   3'- aGGU------GCGGUUG------UCCGG--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 17031 0.71 0.189744
Target:  5'- uUCCACGUCGGCuGGUUCgaGGaCACCCu -3'
miRNA:   3'- -AGGUGCGGUUGuCCGGGggCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 14177 0.71 0.209671
Target:  5'- cUCGCGCCu--GGGCCUgcacauuuacgUCGGCACCCc -3'
miRNA:   3'- aGGUGCGGuugUCCGGG-----------GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 24756 0.7 0.214927
Target:  5'- cUCCgACGgCAACucgaucgucgAGGaCCCCGGCACCg -3'
miRNA:   3'- -AGG-UGCgGUUG----------UCCgGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 53145 0.7 0.225779
Target:  5'- cUCCACGUCgAGCAcGCCCagCCGGUugcGCCCc -3'
miRNA:   3'- -AGGUGCGG-UUGUcCGGG--GGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 68472 0.7 0.231377
Target:  5'- gCCGCcaguCCGAUGcGGCCCCCuGGC-CCCg -3'
miRNA:   3'- aGGUGc---GGUUGU-CCGGGGG-CCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 29200 0.7 0.242924
Target:  5'- gCCGCG-CAACAGGCCgcgcugauguUCCaGCACCUg -3'
miRNA:   3'- aGGUGCgGUUGUCCGG----------GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 19402 0.69 0.248875
Target:  5'- aUCACGaCGACGGGCCaagCCUGGUGuCCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGG---GGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 6823 0.71 0.180418
Target:  5'- uUCgCAcCGCCcGCAGGCgCaCCGGCuCCCg -3'
miRNA:   3'- -AG-GU-GCGGuUGUCCGgG-GGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 37920 0.72 0.1715
Target:  5'- gUCCAC-CCAGCGGGCggguggucggagCUggCCGGCACCUa -3'
miRNA:   3'- -AGGUGcGGUUGUCCG------------GG--GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 2891 0.72 0.1715
Target:  5'- -gCugGCCAGgauCGGGCaCCCGGC-CCCa -3'
miRNA:   3'- agGugCGGUU---GUCCGgGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 30298 0.76 0.080216
Target:  5'- aCCugGCCuccgGCGcGGUUCCCGGCACCa -3'
miRNA:   3'- aGGugCGGu---UGU-CCGGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 38847 0.76 0.084629
Target:  5'- gCCGCGCCGGuCGGuGCCCgCGGUgccACCCa -3'
miRNA:   3'- aGGUGCGGUU-GUC-CGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 27854 0.76 0.084629
Target:  5'- gUCCGCGCgGAgGGucGCCCUCGGC-CCCa -3'
miRNA:   3'- -AGGUGCGgUUgUC--CGGGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 32080 0.74 0.116341
Target:  5'- aCCG-GCgGGCAGGuuCCCCCGGgCACCCc -3'
miRNA:   3'- aGGUgCGgUUGUCC--GGGGGCC-GUGGG- -5'
19263 5' -62.8 NC_004685.1 + 19116 0.73 0.143321
Target:  5'- gCCGCGCUGG-AGGCggCgCCGGCGCCCa -3'
miRNA:   3'- aGGUGCGGUUgUCCG--GgGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 23930 0.73 0.147071
Target:  5'- aCCGCGCagcgAACAcGcGCCgCCCGGCgACCCg -3'
miRNA:   3'- aGGUGCGg---UUGU-C-CGG-GGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 48141 0.73 0.15091
Target:  5'- cUCAUGCCGGCAccaCCCCGGCugGCCCg -3'
miRNA:   3'- aGGUGCGGUUGUccgGGGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 6428 0.72 0.154443
Target:  5'- gCgGCGCCAaggGCAucaccuGGCCcgaacagCCCGGCACCCc -3'
miRNA:   3'- aGgUGCGGU---UGU------CCGG-------GGGCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.