miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 1015 0.68 0.300878
Target:  5'- gUUCACGUagaaguACAGGCCacagCCCGaGCACCa -3'
miRNA:   3'- -AGGUGCGgu----UGUCCGG----GGGC-CGUGGg -5'
19263 5' -62.8 NC_004685.1 + 2084 0.66 0.428732
Target:  5'- gUCGCGCUGAuCGGGUCCCauuCGGC-CCa -3'
miRNA:   3'- aGGUGCGGUU-GUCCGGGG---GCCGuGGg -5'
19263 5' -62.8 NC_004685.1 + 2429 0.67 0.360882
Target:  5'- aCCugGUgCucCAGGUCCCCGcGUGCUCg -3'
miRNA:   3'- aGGugCG-GuuGUCCGGGGGC-CGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 2891 0.72 0.1715
Target:  5'- -gCugGCCAGgauCGGGCaCCCGGC-CCCa -3'
miRNA:   3'- agGugCGGUU---GUCCGgGGGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 4386 0.66 0.410196
Target:  5'- uUCCGCGCCGcCAGccuuguaGUCgCCGGuCGCCg -3'
miRNA:   3'- -AGGUGCGGUuGUC-------CGGgGGCC-GUGGg -5'
19263 5' -62.8 NC_004685.1 + 4435 0.67 0.352943
Target:  5'- gUUCGCGUCAGgccgcguuCGGGCgCCCCGGCGa-- -3'
miRNA:   3'- -AGGUGCGGUU--------GUCCG-GGGGCCGUggg -5'
19263 5' -62.8 NC_004685.1 + 6428 0.72 0.154443
Target:  5'- gCgGCGCCAaggGCAucaccuGGCCcgaacagCCCGGCACCCc -3'
miRNA:   3'- aGgUGCGGU---UGU------CCGG-------GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 6823 0.71 0.180418
Target:  5'- uUCgCAcCGCCcGCAGGCgCaCCGGCuCCCg -3'
miRNA:   3'- -AG-GU-GCGGuUGUCCGgG-GGCCGuGGG- -5'
19263 5' -62.8 NC_004685.1 + 6933 0.66 0.393013
Target:  5'- gCCucaGCCcACcguGGCCCCCGaGCcggucaaGCCCg -3'
miRNA:   3'- aGGug-CGGuUGu--CCGGGGGC-CG-------UGGG- -5'
19263 5' -62.8 NC_004685.1 + 8562 0.69 0.254946
Target:  5'- gUCUGCGCCuguuuCGGguGCCgCCCGGCACgCu -3'
miRNA:   3'- -AGGUGCGGuu---GUC--CGG-GGGCCGUGgG- -5'
19263 5' -62.8 NC_004685.1 + 9423 0.71 0.185029
Target:  5'- aUCAC-CCAuGCGGGCCgaCCGGCGCCg -3'
miRNA:   3'- aGGUGcGGU-UGUCCGGg-GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 9960 0.67 0.329875
Target:  5'- aUCCGCGgCGACGuGGacuaCCCG-CACCCg -3'
miRNA:   3'- -AGGUGCgGUUGU-CCgg--GGGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 10138 0.66 0.385435
Target:  5'- gCUGCGacCCGACGGGCUggcaGGCACCCc -3'
miRNA:   3'- aGGUGC--GGUUGUCCGGggg-CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 10944 0.66 0.393861
Target:  5'- aCCGCGCCgGGCAGGCgUUcgucaugaugaCGGCcacgACCCg -3'
miRNA:   3'- aGGUGCGG-UUGUCCGgGG-----------GCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 11143 0.72 0.162979
Target:  5'- gCCgACGCCAccaACGGGUUCaCCGGCGCUg -3'
miRNA:   3'- aGG-UGCGGU---UGUCCGGG-GGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 12429 0.66 0.428732
Target:  5'- gCCAuCGCCGAgaAGGCggcagCCCuGCGCCCc -3'
miRNA:   3'- aGGU-GCGGUUg-UCCGg----GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 12863 0.78 0.059624
Target:  5'- gCCACGaCGGCGGGCagaCCUGGCAUCCg -3'
miRNA:   3'- aGGUGCgGUUGUCCGg--GGGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 14177 0.71 0.209671
Target:  5'- cUCGCGCCu--GGGCCUgcacauuuacgUCGGCACCCc -3'
miRNA:   3'- aGGUGCGGuugUCCGGG-----------GGCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 15595 0.66 0.393861
Target:  5'- gCCcCGUCGACuacaaCCCCGGCgACCCu -3'
miRNA:   3'- aGGuGCGGUUGuccg-GGGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 16318 0.73 0.139297
Target:  5'- -gCugGCCAGCAucgccgcGGCCaCCGGCGCCg -3'
miRNA:   3'- agGugCGGUUGU-------CCGGgGGCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.