miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 3' -61 NC_004685.1 + 31693 0.66 0.504294
Target:  5'- cGCCCUGcgucACCaccaGGCGCGGGCGAa-- -3'
miRNA:   3'- cUGGGGCu---UGGg---CCGCGUCUGCUcgu -5'
19264 3' -61 NC_004685.1 + 32410 0.7 0.292002
Target:  5'- cGACCCgaaCGGACCCGGCacgaacaguccGCGGAUGGccuGCAc -3'
miRNA:   3'- -CUGGG---GCUUGGGCCG-----------CGUCUGCU---CGU- -5'
19264 3' -61 NC_004685.1 + 38519 0.72 0.217833
Target:  5'- cGCCCaGGA-CCGGCGCGGcgGCGAGCGu -3'
miRNA:   3'- cUGGGgCUUgGGCCGCGUC--UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 69410 1.08 0.000452
Target:  5'- cGACCCCGAACCCGGCGCAGACGAGCAa -3'
miRNA:   3'- -CUGGGGCUUGGGCCGCGUCUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 68600 0.66 0.484732
Target:  5'- uGCCCCGcAUCCGccCGCAGgacugcGCGGGCAa -3'
miRNA:   3'- cUGGGGCuUGGGCc-GCGUC------UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 61594 0.66 0.484732
Target:  5'- uGACCaCCG-ACCCGGCcauCAGAUGcGCc -3'
miRNA:   3'- -CUGG-GGCuUGGGCCGc--GUCUGCuCGu -5'
19264 3' -61 NC_004685.1 + 6556 0.66 0.484732
Target:  5'- uGAUCCUGGaggugcuggcaGCUCGGCaccgGCuGGGCGAGCAg -3'
miRNA:   3'- -CUGGGGCU-----------UGGGCCG----CG-UCUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 26627 0.66 0.465539
Target:  5'- cGACCgcggCGAGCaCCGcCGCAccGACGAGCAc -3'
miRNA:   3'- -CUGGg---GCUUG-GGCcGCGU--CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 69142 0.67 0.401704
Target:  5'- uGCgUCGAcACCCGcGCGCugcuGGCGGGCGa -3'
miRNA:   3'- cUGgGGCU-UGGGC-CGCGu---CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 18656 0.7 0.299002
Target:  5'- cGGCCCCGGuCCUGaCGCAGAUcaGGGCu -3'
miRNA:   3'- -CUGGGGCUuGGGCcGCGUCUG--CUCGu -5'
19264 3' -61 NC_004685.1 + 31989 0.68 0.3761
Target:  5'- cGACCuucaCCGAgccggucgACCCGGCGguG-CGAGUc -3'
miRNA:   3'- -CUGG----GGCU--------UGGGCCGCguCuGCUCGu -5'
19264 3' -61 NC_004685.1 + 39194 0.67 0.414026
Target:  5'- gGACCCCGGaacgcuccacgcGCCgccuggcggcggcuuCGGCGCcggcugggGGACGGGCu -3'
miRNA:   3'- -CUGGGGCU------------UGG---------------GCCGCG--------UCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 67776 0.66 0.494469
Target:  5'- uGACgCC-AACCgCGGcCGCAG-CGGGCAc -3'
miRNA:   3'- -CUGgGGcUUGG-GCC-GCGUCuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 65656 0.69 0.328293
Target:  5'- cGugCCCGAACCCGagccGCGCgaAGGCcAGCc -3'
miRNA:   3'- -CugGGGCUUGGGC----CGCG--UCUGcUCGu -5'
19264 3' -61 NC_004685.1 + 3998 0.66 0.494469
Target:  5'- cACCaa-AGCCCGGCGC-GACGuGCGc -3'
miRNA:   3'- cUGGggcUUGGGCCGCGuCUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 58286 0.67 0.446749
Target:  5'- cACCgCCGaAACCCGGCGCucGAUucGCGc -3'
miRNA:   3'- cUGG-GGC-UUGGGCCGCGu-CUGcuCGU- -5'
19264 3' -61 NC_004685.1 + 61506 0.69 0.313388
Target:  5'- -uCCUCGAACCCGGCcucguGCGcGGCG-GCAa -3'
miRNA:   3'- cuGGGGCUUGGGCCG-----CGU-CUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 3686 0.71 0.240585
Target:  5'- cGACgCCGAcgGCUCGGCGCGGGuguaucgcgcCGAGUAc -3'
miRNA:   3'- -CUGgGGCU--UGGGCCGCGUCU----------GCUCGU- -5'
19264 3' -61 NC_004685.1 + 37132 0.66 0.484732
Target:  5'- cGCCgCGAucuGCuCCGGCGUGGcCGGGCc -3'
miRNA:   3'- cUGGgGCU---UG-GGCCGCGUCuGCUCGu -5'
19264 3' -61 NC_004685.1 + 51145 0.66 0.484732
Target:  5'- aGACCCuCGGGCUcgacuucgCGGuUGCGGACGcGCAc -3'
miRNA:   3'- -CUGGG-GCUUGG--------GCC-GCGUCUGCuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.