miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 3' -56 NC_004685.1 + 69205 1.13 0.000609
Target:  5'- aUGUCUGCGCUCACCGAAGCCAUCGCCg -3'
miRNA:   3'- -ACAGACGCGAGUGGCUUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 36613 0.8 0.126291
Target:  5'- cGggUGCGCUCGCCGcgggcAAGCuCAUCGCCg -3'
miRNA:   3'- aCagACGCGAGUGGC-----UUCG-GUAGCGG- -5'
19265 3' -56 NC_004685.1 + 38144 0.79 0.14474
Target:  5'- gGUgCagGCGUUCACCGggGCCAacUCGCUg -3'
miRNA:   3'- aCA-Ga-CGCGAGUGGCuuCGGU--AGCGG- -5'
19265 3' -56 NC_004685.1 + 60135 0.77 0.184231
Target:  5'- gGUC-GCGC--GCCGuGGCCAUCGCCg -3'
miRNA:   3'- aCAGaCGCGagUGGCuUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 277 0.77 0.194213
Target:  5'- cGUCUGCGC-CGgguUCGggGUCGUCGUCg -3'
miRNA:   3'- aCAGACGCGaGU---GGCuuCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 65533 0.76 0.215601
Target:  5'- cGUCgGCaaGCUCGCCGAGGUCGUCGg- -3'
miRNA:   3'- aCAGaCG--CGAGUGGCUUCGGUAGCgg -5'
19265 3' -56 NC_004685.1 + 51359 0.75 0.257868
Target:  5'- gGUUgaagUGCGCgucgcCACUGcGGCCGUCGCCa -3'
miRNA:   3'- aCAG----ACGCGa----GUGGCuUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 20013 0.75 0.26179
Target:  5'- cGUCUGCGCgagucgggcgaccCGCCGggGCggauCAUCGCg -3'
miRNA:   3'- aCAGACGCGa------------GUGGCuuCG----GUAGCGg -5'
19265 3' -56 NC_004685.1 + 47929 0.74 0.284935
Target:  5'- gGUCca-GCUCGauaaUGAGGCCGUCGCCg -3'
miRNA:   3'- aCAGacgCGAGUg---GCUUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 8111 0.74 0.292043
Target:  5'- gGUCaacGCGCUgGCCGAGGCCGgguucCGCa -3'
miRNA:   3'- aCAGa--CGCGAgUGGCUUCGGUa----GCGg -5'
19265 3' -56 NC_004685.1 + 8479 0.74 0.306674
Target:  5'- ----cGCGCUgGCCGAGGCUgagCGCCg -3'
miRNA:   3'- acagaCGCGAgUGGCUUCGGua-GCGG- -5'
19265 3' -56 NC_004685.1 + 21221 0.73 0.321858
Target:  5'- uUGUCggcGCGCUgAUCGGcgcGGCCAUCGUg -3'
miRNA:   3'- -ACAGa--CGCGAgUGGCU---UCGGUAGCGg -5'
19265 3' -56 NC_004685.1 + 6782 0.73 0.321858
Target:  5'- cGUCUGCGUgaCGCCcuggucGAAGCCAUCGaCa -3'
miRNA:   3'- aCAGACGCGa-GUGG------CUUCGGUAGCgG- -5'
19265 3' -56 NC_004685.1 + 9857 0.73 0.332818
Target:  5'- ----gGCGCgCACCGAGcaggaccuguucaccGCCAUCGCCa -3'
miRNA:   3'- acagaCGCGaGUGGCUU---------------CGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 45959 0.73 0.361401
Target:  5'- cGUCUuccagccccagugGCGCUCGCCGuccAGGCCAauccagUUGCCc -3'
miRNA:   3'- aCAGA-------------CGCGAGUGGC---UUCGGU------AGCGG- -5'
19265 3' -56 NC_004685.1 + 17169 0.73 0.362243
Target:  5'- cGUCgGCGUUCGCCGcGGCgcugCGCCu -3'
miRNA:   3'- aCAGaCGCGAGUGGCuUCGgua-GCGG- -5'
19265 3' -56 NC_004685.1 + 20242 0.72 0.379353
Target:  5'- -aUCUGCGgUCAUCGc-GCCGUCGaCCa -3'
miRNA:   3'- acAGACGCgAGUGGCuuCGGUAGC-GG- -5'
19265 3' -56 NC_004685.1 + 16556 0.72 0.379353
Target:  5'- aUGgcgGCGCUCgACCGcugggcgcuGCCGUCGCCu -3'
miRNA:   3'- -ACagaCGCGAG-UGGCuu-------CGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 5472 0.72 0.396997
Target:  5'- gGUCauccgGCGCgguucgugGCCGAcaugguggcGGCCAUCGCCg -3'
miRNA:   3'- aCAGa----CGCGag------UGGCU---------UCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 16240 0.72 0.396997
Target:  5'- cGUCgaacGCagGCUCagcgagACCGAGGCCGUCGaCCu -3'
miRNA:   3'- aCAGa---CG--CGAG------UGGCUUCGGUAGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.