miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 3' -56 NC_004685.1 + 277 0.77 0.194213
Target:  5'- cGUCUGCGC-CGgguUCGggGUCGUCGUCg -3'
miRNA:   3'- aCAGACGCGaGU---GGCuuCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 2573 0.66 0.756617
Target:  5'- --aCUGCGCcgCGCCGA-GC-GUCGCa -3'
miRNA:   3'- acaGACGCGa-GUGGCUuCGgUAGCGg -5'
19265 3' -56 NC_004685.1 + 5472 0.72 0.396997
Target:  5'- gGUCauccgGCGCgguucgugGCCGAcaugguggcGGCCAUCGCCg -3'
miRNA:   3'- aCAGa----CGCGag------UGGCU---------UCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 6280 0.68 0.607096
Target:  5'- cGUCgacgacgUGCGCgacgACCGAGGCUucAUCGUCg -3'
miRNA:   3'- aCAG-------ACGCGag--UGGCUUCGG--UAGCGG- -5'
19265 3' -56 NC_004685.1 + 6674 0.69 0.544172
Target:  5'- cG-CUGCGCaagGCCGggGCCAaggaGCCc -3'
miRNA:   3'- aCaGACGCGag-UGGCuuCGGUag--CGG- -5'
19265 3' -56 NC_004685.1 + 6782 0.73 0.321858
Target:  5'- cGUCUGCGUgaCGCCcuggucGAAGCCAUCGaCa -3'
miRNA:   3'- aCAGACGCGa-GUGG------CUUCGGUAGCgG- -5'
19265 3' -56 NC_004685.1 + 8111 0.74 0.292043
Target:  5'- gGUCaacGCGCUgGCCGAGGCCGgguucCGCa -3'
miRNA:   3'- aCAGa--CGCGAgUGGCUUCGGUa----GCGg -5'
19265 3' -56 NC_004685.1 + 8479 0.74 0.306674
Target:  5'- ----cGCGCUgGCCGAGGCUgagCGCCg -3'
miRNA:   3'- acagaCGCGAgUGGCUUCGGua-GCGG- -5'
19265 3' -56 NC_004685.1 + 8624 0.66 0.756617
Target:  5'- cUGUCcaucgGCGa-CAUCGAGGUCAUCcaGCCg -3'
miRNA:   3'- -ACAGa----CGCgaGUGGCUUCGGUAG--CGG- -5'
19265 3' -56 NC_004685.1 + 8841 0.67 0.68357
Target:  5'- aUGUgCggcagGCGgUCACCGcGGgugacCCGUCGCCg -3'
miRNA:   3'- -ACA-Ga----CGCgAGUGGCuUC-----GGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 9384 0.67 0.68357
Target:  5'- cG-CgGCGCUgaGCCGGAuGgCGUCGCCg -3'
miRNA:   3'- aCaGaCGCGAg-UGGCUU-CgGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 9857 0.73 0.332818
Target:  5'- ----gGCGCgCACCGAGcaggaccuguucaccGCCAUCGCCa -3'
miRNA:   3'- acagaCGCGaGUGGCUU---------------CGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 10107 0.7 0.502722
Target:  5'- ---gUGCGCUCACCc--GCCGcCGCCu -3'
miRNA:   3'- acagACGCGAGUGGcuuCGGUaGCGG- -5'
19265 3' -56 NC_004685.1 + 10794 0.66 0.736196
Target:  5'- cGUgCUGUaCUCACaGAAGCCcUCgGCCg -3'
miRNA:   3'- aCA-GACGcGAGUGgCUUCGGuAG-CGG- -5'
19265 3' -56 NC_004685.1 + 11157 0.67 0.68357
Target:  5'- ----cGgGUUCACCGgcGCUgagAUCGCCg -3'
miRNA:   3'- acagaCgCGAGUGGCuuCGG---UAGCGG- -5'
19265 3' -56 NC_004685.1 + 11745 0.66 0.716421
Target:  5'- cG-CUGUGCccgauggagCGCCGcgaggagcugcacgcAGCCAUCGCCg -3'
miRNA:   3'- aCaGACGCGa--------GUGGCu--------------UCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 11858 0.66 0.704836
Target:  5'- -aUCUGCGgugagaucgUCGCCGAcgacgugaacacGGCCcgCGCCu -3'
miRNA:   3'- acAGACGCg--------AGUGGCU------------UCGGuaGCGG- -5'
19265 3' -56 NC_004685.1 + 11919 0.68 0.608174
Target:  5'- cGUUUcCaa-CACCGAGGUCAUCGCCa -3'
miRNA:   3'- aCAGAcGcgaGUGGCUUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 12010 0.71 0.452967
Target:  5'- ---aUGCuCUCGCCGGAcGCCAaCGCCg -3'
miRNA:   3'- acagACGcGAGUGGCUU-CGGUaGCGG- -5'
19265 3' -56 NC_004685.1 + 12396 0.67 0.693168
Target:  5'- cUGgcgCUGUaccaaaaGCUCgACCaGGugcgGGCCAUCGCCg -3'
miRNA:   3'- -ACa--GACG-------CGAG-UGG-CU----UCGGUAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.