miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 3' -56 NC_004685.1 + 33914 0.68 0.640551
Target:  5'- aGUCgggcaccgGCGCUUugUGGAGCUgccaccCGCCa -3'
miRNA:   3'- aCAGa-------CGCGAGugGCUUCGGua----GCGG- -5'
19265 3' -56 NC_004685.1 + 25793 0.69 0.533695
Target:  5'- ----cGUGCUCGCCGGgcagcggcggugGGCCGgucagCGCCg -3'
miRNA:   3'- acagaCGCGAGUGGCU------------UCGGUa----GCGG- -5'
19265 3' -56 NC_004685.1 + 6674 0.69 0.544172
Target:  5'- cG-CUGCGCaagGCCGggGCCAaggaGCCc -3'
miRNA:   3'- aCaGACGCGag-UGGCuuCGGUag--CGG- -5'
19265 3' -56 NC_004685.1 + 29528 0.69 0.575974
Target:  5'- -cUCUGCuCUgGCCGAgcauGGCCGaggacaUCGCCg -3'
miRNA:   3'- acAGACGcGAgUGGCU----UCGGU------AGCGG- -5'
19265 3' -56 NC_004685.1 + 54797 0.69 0.575974
Target:  5'- cGcUUGCGCUCcUCGcGGGCCuUCGCCu -3'
miRNA:   3'- aCaGACGCGAGuGGC-UUCGGuAGCGG- -5'
19265 3' -56 NC_004685.1 + 38196 0.68 0.586673
Target:  5'- cUGUUUGCGCUCAgcaacauucgacCUGAGaaCAUCGUCg -3'
miRNA:   3'- -ACAGACGCGAGU------------GGCUUcgGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 29787 0.68 0.597409
Target:  5'- ----cGCGCUCAagguguucuUCGAGGaCAUCGCCg -3'
miRNA:   3'- acagaCGCGAGU---------GGCUUCgGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 11919 0.68 0.608174
Target:  5'- cGUUUcCaa-CACCGAGGUCAUCGCCa -3'
miRNA:   3'- aCAGAcGcgaGUGGCUUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 56564 0.68 0.629754
Target:  5'- --cCUGCGCggcuUCACCuucuCCGUCGCCa -3'
miRNA:   3'- acaGACGCG----AGUGGcuucGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 48076 0.7 0.502722
Target:  5'- ----cGCGCaggauggCACCGAacgugccgacccAGCCGUCGCCc -3'
miRNA:   3'- acagaCGCGa------GUGGCU------------UCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 22708 0.7 0.47256
Target:  5'- gGUCgGCGUgga-CGAGGCCAcCGCCg -3'
miRNA:   3'- aCAGaCGCGagugGCUUCGGUaGCGG- -5'
19265 3' -56 NC_004685.1 + 30458 0.71 0.462709
Target:  5'- cGUCccccaGCcggCGCCGAAGCCGcCGCCa -3'
miRNA:   3'- aCAGacg--CGa--GUGGCUUCGGUaGCGG- -5'
19265 3' -56 NC_004685.1 + 38144 0.79 0.14474
Target:  5'- gGUgCagGCGUUCACCGggGCCAacUCGCUg -3'
miRNA:   3'- aCA-Ga-CGCGAGUGGCuuCGGU--AGCGG- -5'
19265 3' -56 NC_004685.1 + 277 0.77 0.194213
Target:  5'- cGUCUGCGC-CGgguUCGggGUCGUCGUCg -3'
miRNA:   3'- aCAGACGCGaGU---GGCuuCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 47929 0.74 0.284935
Target:  5'- gGUCca-GCUCGauaaUGAGGCCGUCGCCg -3'
miRNA:   3'- aCAGacgCGAGUg---GCUUCGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 8111 0.74 0.292043
Target:  5'- gGUCaacGCGCUgGCCGAGGCCGgguucCGCa -3'
miRNA:   3'- aCAGa--CGCGAgUGGCUUCGGUa----GCGg -5'
19265 3' -56 NC_004685.1 + 8479 0.74 0.306674
Target:  5'- ----cGCGCUgGCCGAGGCUgagCGCCg -3'
miRNA:   3'- acagaCGCGAgUGGCUUCGGua-GCGG- -5'
19265 3' -56 NC_004685.1 + 16556 0.72 0.379353
Target:  5'- aUGgcgGCGCUCgACCGcugggcgcuGCCGUCGCCu -3'
miRNA:   3'- -ACagaCGCGAG-UGGCuu-------CGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 16240 0.72 0.396997
Target:  5'- cGUCgaacGCagGCUCagcgagACCGAGGCCGUCGaCCu -3'
miRNA:   3'- aCAGa---CG--CGAG------UGGCUUCGGUAGC-GG- -5'
19265 3' -56 NC_004685.1 + 33066 0.71 0.443338
Target:  5'- cGUCgaggUGCGCggcaaaaCACCGGAGCgCAcCGCCc -3'
miRNA:   3'- aCAG----ACGCGa------GUGGCUUCG-GUaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.