miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 18830 0.68 0.397178
Target:  5'- ---cGGCU--GCGGcuguacaggcaggcGCGCACCGCCGAg -3'
miRNA:   3'- agucCCGAagCGCC--------------UGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 19190 0.67 0.444564
Target:  5'- gUCGGGGCacaUCGC--ACGCGCCGaCCa- -3'
miRNA:   3'- -AGUCCCGa--AGCGccUGCGUGGC-GGcu -5'
19267 3' -60.8 NC_004685.1 + 20466 0.72 0.216471
Target:  5'- uUCGGccgcguuGGCcaCGCGGACGCcagcagucaucACCGCCGAa -3'
miRNA:   3'- -AGUC-------CCGaaGCGCCUGCG-----------UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 20868 0.68 0.408499
Target:  5'- gCAGGGCaaCGCca--GCGCCGCUGAu -3'
miRNA:   3'- aGUCCCGaaGCGccugCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 22704 0.67 0.435379
Target:  5'- cCGcGGUcggCGUGGACGaggcCACCGCCGAg -3'
miRNA:   3'- aGUcCCGaa-GCGCCUGC----GUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 23893 0.7 0.304772
Target:  5'- cCAGGGCca-GCuuGCGCACCGCCu- -3'
miRNA:   3'- aGUCCCGaagCGccUGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 27245 0.74 0.172752
Target:  5'- -aAGGGCUgUCGUGGGCGguCaGCCGAg -3'
miRNA:   3'- agUCCCGA-AGCGCCUGCguGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 30120 0.69 0.35797
Target:  5'- -gGGGGCagugUCGCGGcCGCACUcgGCCc- -3'
miRNA:   3'- agUCCCGa---AGCGCCuGCGUGG--CGGcu -5'
19267 3' -60.8 NC_004685.1 + 30339 0.69 0.35797
Target:  5'- -gAGGGUggUC-UGGucCGCGCCGCCGAc -3'
miRNA:   3'- agUCCCGa-AGcGCCu-GCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 30702 0.81 0.04761
Target:  5'- cUCGGGGU--CGCGGuACGCGCCGCCGu -3'
miRNA:   3'- -AGUCCCGaaGCGCC-UGCGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 30978 0.67 0.444564
Target:  5'- aCAGGGCa--GCGGuuGUAUgCGCCGGg -3'
miRNA:   3'- aGUCCCGaagCGCCugCGUG-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 31118 0.68 0.399772
Target:  5'- -aAGGGCcUCGC--AgGCAUCGCCGAg -3'
miRNA:   3'- agUCCCGaAGCGccUgCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 31603 0.68 0.391166
Target:  5'- cCGGGGCaUCGacuGGACGgGuCCGaCCGAg -3'
miRNA:   3'- aGUCCCGaAGCg--CCUGCgU-GGC-GGCU- -5'
19267 3' -60.8 NC_004685.1 + 32195 0.77 0.096774
Target:  5'- cCAGGGCUggGCGGGuucucccaguCGaCGCCGCCGAa -3'
miRNA:   3'- aGUCCCGAagCGCCU----------GC-GUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 34245 0.66 0.50181
Target:  5'- aCccGGCcacgUCGaccaccuGACGCACCGCCGAg -3'
miRNA:   3'- aGucCCGa---AGCgc-----CUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 37598 0.66 0.50181
Target:  5'- uUCGGGGUgccCGgGGGaaccUGC-CCGCCGGu -3'
miRNA:   3'- -AGUCCCGaa-GCgCCU----GCGuGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 37801 0.66 0.482345
Target:  5'- gUCAaauGGGCUgacuaCGUGG--GCACCGCCGc -3'
miRNA:   3'- -AGU---CCCGAa----GCGCCugCGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 40459 0.66 0.511671
Target:  5'- gCGGGGCUggaCGCcGAaccugGCGCUGCCGc -3'
miRNA:   3'- aGUCCCGAa--GCGcCUg----CGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 40743 0.69 0.35797
Target:  5'- gCGGGGUgagCGCGccaagguuGCGCGCCGCCc- -3'
miRNA:   3'- aGUCCCGaa-GCGCc-------UGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 43221 0.67 0.444564
Target:  5'- uUCuGGGUggagGCGGGCaGCACCacGCCGGu -3'
miRNA:   3'- -AGuCCCGaag-CGCCUG-CGUGG--CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.