miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19269 3' -50.1 NC_004685.1 + 68267 0.66 0.97016
Target:  5'- aCGCgCAUGAgGAgG--UGUUCGGAAGCc -3'
miRNA:   3'- -GUG-GUACUgCUgUggACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 57090 0.66 0.97016
Target:  5'- gCACCucGGCGGCGC--GUUCGGAcACg -3'
miRNA:   3'- -GUGGuaCUGCUGUGgaCAAGCCUuUG- -5'
19269 3' -50.1 NC_004685.1 + 51224 0.66 0.963262
Target:  5'- cCACCAUGcCGAgACUg--UCGGAcGCc -3'
miRNA:   3'- -GUGGUACuGCUgUGGacaAGCCUuUG- -5'
19269 3' -50.1 NC_004685.1 + 65323 0.66 0.959426
Target:  5'- gGCCAuuUGacGCGAUACCcg-UCGGGGACc -3'
miRNA:   3'- gUGGU--AC--UGCUGUGGacaAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 19697 0.67 0.950946
Target:  5'- gGCCGUGGCGG-GCCgaggcGUUCGGccACa -3'
miRNA:   3'- gUGGUACUGCUgUGGa----CAAGCCuuUG- -5'
19269 3' -50.1 NC_004685.1 + 68548 0.67 0.944842
Target:  5'- gGCCAguccGAUgcgGGCGCCccgaugcgucggggUGUUCGGAAACc -3'
miRNA:   3'- gUGGUa---CUG---CUGUGG--------------ACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 47550 0.67 0.941358
Target:  5'- uGCCAggUGGCgGGCAgggUGUUCGGAAACc -3'
miRNA:   3'- gUGGU--ACUG-CUGUgg-ACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 33181 0.67 0.936139
Target:  5'- gGCCGgugGugGGCGCCgGUgCGGuGGACg -3'
miRNA:   3'- gUGGUa--CugCUGUGGaCAaGCC-UUUG- -5'
19269 3' -50.1 NC_004685.1 + 66555 0.67 0.930633
Target:  5'- gGCCAagucGGCGGC-CCUG--CGGAAGCg -3'
miRNA:   3'- gUGGUa---CUGCUGuGGACaaGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 2421 0.68 0.924244
Target:  5'- uGCCA-GACGACgcggccgccggugGCCUGUUCGacGGCg -3'
miRNA:   3'- gUGGUaCUGCUG-------------UGGACAAGCcuUUG- -5'
19269 3' -50.1 NC_004685.1 + 4505 0.68 0.905737
Target:  5'- cCGCagGUGAUucugGCCUGUUCGGAAACc -3'
miRNA:   3'- -GUGg-UACUGcug-UGGACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 8392 0.68 0.905737
Target:  5'- gUACCccGACGGCaACCUGUgccugCGGcuGCc -3'
miRNA:   3'- -GUGGuaCUGCUG-UGGACAa----GCCuuUG- -5'
19269 3' -50.1 NC_004685.1 + 466 0.68 0.905737
Target:  5'- -cCCGUGGcCGcCACCaUG-UCGGAGACg -3'
miRNA:   3'- guGGUACU-GCuGUGG-ACaAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 17205 0.68 0.905737
Target:  5'- uCGCCAgaaACGACugagUgUGUUCGGAAACc -3'
miRNA:   3'- -GUGGUac-UGCUGu---GgACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 43393 0.68 0.898801
Target:  5'- gCACCAUGAUGACcucGCCguUGUUCaGGGu-- -3'
miRNA:   3'- -GUGGUACUGCUG---UGG--ACAAG-CCUuug -5'
19269 3' -50.1 NC_004685.1 + 43985 0.68 0.898801
Target:  5'- cCGCCGUGGgagcgUGACAgCCUGga-GGAAACc -3'
miRNA:   3'- -GUGGUACU-----GCUGU-GGACaagCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 2595 0.69 0.884099
Target:  5'- cCGCCAgGGCGGCauaccgcucgGCCUGcUCGGcAGCg -3'
miRNA:   3'- -GUGGUaCUGCUG----------UGGACaAGCCuUUG- -5'
19269 3' -50.1 NC_004685.1 + 14956 0.69 0.884099
Target:  5'- cCGCCGUGGCGuGCGCucugcgCUGUUCagguGGggGCu -3'
miRNA:   3'- -GUGGUACUGC-UGUG------GACAAG----CCuuUG- -5'
19269 3' -50.1 NC_004685.1 + 19378 0.69 0.884099
Target:  5'- aGCCcgcUGAUGAacugaCUGUUCGGAAACc -3'
miRNA:   3'- gUGGu--ACUGCUgug--GACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 58737 0.69 0.860047
Target:  5'- uCAUCAUGACGaACGCCUGccCGGc-GCg -3'
miRNA:   3'- -GUGGUACUGC-UGUGGACaaGCCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.