miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 67827 1.07 0.000977
Target:  5'- cCUCAACCUGGCCGAAGCCGAGCUGGUc -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGGCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 36585 0.83 0.047533
Target:  5'- aUCAACCUGGCCGAcGCCGAGgacCUGGc -3'
miRNA:   3'- gAGUUGGACCGGCUuCGGCUC---GACCa -5'
19270 5' -58 NC_004685.1 + 38327 0.82 0.061355
Target:  5'- --gGGCCUGGCCGAucuGCgCGAGCUGGUc -3'
miRNA:   3'- gagUUGGACCGGCUu--CG-GCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 8474 0.77 0.140919
Target:  5'- -gCGGCCgcgcUGGCCGAGGCUGAGCgccGGUg -3'
miRNA:   3'- gaGUUGG----ACCGGCUUCGGCUCGa--CCA- -5'
19270 5' -58 NC_004685.1 + 19148 0.76 0.156915
Target:  5'- -aCAACCUGGUCGgcGUCGGGCUGuGg -3'
miRNA:   3'- gaGUUGGACCGGCuuCGGCUCGAC-Ca -5'
19270 5' -58 NC_004685.1 + 9998 0.76 0.169972
Target:  5'- gCUCAcCCUGucGCCGAugcucacGCCGAGCUGGg -3'
miRNA:   3'- -GAGUuGGAC--CGGCUu------CGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 14475 0.75 0.179208
Target:  5'- uUCGACCUGGCCGccuGGuCCGAcCUGGg -3'
miRNA:   3'- gAGUUGGACCGGCu--UC-GGCUcGACCa -5'
19270 5' -58 NC_004685.1 + 8112 0.74 0.20963
Target:  5'- gUCAACgcgCUGGCCGAGGCCGGGUUc-- -3'
miRNA:   3'- gAGUUG---GACCGGCUUCGGCUCGAcca -5'
19270 5' -58 NC_004685.1 + 45201 0.74 0.215114
Target:  5'- -gCGACCUGuacGCCGcGGCCGAGCcgGGUg -3'
miRNA:   3'- gaGUUGGAC---CGGCuUCGGCUCGa-CCA- -5'
19270 5' -58 NC_004685.1 + 29440 0.73 0.244401
Target:  5'- aCUCAgaACUUGGCCGAGGgguuCCGgcAGCUGGa -3'
miRNA:   3'- -GAGU--UGGACCGGCUUC----GGC--UCGACCa -5'
19270 5' -58 NC_004685.1 + 36780 0.73 0.250642
Target:  5'- uUCGACUggcGGCCcGAGCCGcagGGCUGGUg -3'
miRNA:   3'- gAGUUGGa--CCGGcUUCGGC---UCGACCA- -5'
19270 5' -58 NC_004685.1 + 12136 0.73 0.255089
Target:  5'- aUCGGCCUGGCgCGcAGCucguuccuggacuuCGAGCUGGa -3'
miRNA:   3'- gAGUUGGACCG-GCuUCG--------------GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 2207 0.73 0.263518
Target:  5'- -gCGAgCUGGCCG-AGCUGgAGCUGGa -3'
miRNA:   3'- gaGUUgGACCGGCuUCGGC-UCGACCa -5'
19270 5' -58 NC_004685.1 + 5511 0.72 0.276926
Target:  5'- aUCGccGCCgagcGGCCGggGUucuaCGAGCUGGUc -3'
miRNA:   3'- gAGU--UGGa---CCGGCuuCG----GCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 6643 0.72 0.276926
Target:  5'- --aGACCUGGaaGAGGCCGGuCUGGUg -3'
miRNA:   3'- gagUUGGACCggCUUCGGCUcGACCA- -5'
19270 5' -58 NC_004685.1 + 68392 0.72 0.290163
Target:  5'- cCUCGACggaguguCUGauGCCGuGGCCGAGCUGGc -3'
miRNA:   3'- -GAGUUG-------GAC--CGGCuUCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 67313 0.72 0.305364
Target:  5'- gCUCGugCUGGCCGAAcGCUG-GCccggGGUg -3'
miRNA:   3'- -GAGUugGACCGGCUU-CGGCuCGa---CCA- -5'
19270 5' -58 NC_004685.1 + 2495 0.71 0.312814
Target:  5'- aCUCGugCUGGCCGA--CCGGGCgcaaGGa -3'
miRNA:   3'- -GAGUugGACCGGCUucGGCUCGa---CCa -5'
19270 5' -58 NC_004685.1 + 34598 0.71 0.343986
Target:  5'- ---cGCCUGGCCGAGGaaGAGUcGGUc -3'
miRNA:   3'- gaguUGGACCGGCUUCggCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 54920 0.71 0.35212
Target:  5'- gUCGGCUUGGCUG-AGCC--GCUGGUa -3'
miRNA:   3'- gAGUUGGACCGGCuUCGGcuCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.