miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 2207 0.73 0.263518
Target:  5'- -gCGAgCUGGCCG-AGCUGgAGCUGGa -3'
miRNA:   3'- gaGUUgGACCGGCuUCGGC-UCGACCa -5'
19270 5' -58 NC_004685.1 + 2241 0.66 0.593403
Target:  5'- --aGACCUGccuGCCGcccGGCCGGGCUGa- -3'
miRNA:   3'- gagUUGGAC---CGGCu--UCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 2300 0.68 0.45987
Target:  5'- gUCGACCgGGCCGAGGCuCcAGC-GGa -3'
miRNA:   3'- gAGUUGGaCCGGCUUCG-GcUCGaCCa -5'
19270 5' -58 NC_004685.1 + 2495 0.71 0.312814
Target:  5'- aCUCGugCUGGCCGA--CCGGGCgcaaGGa -3'
miRNA:   3'- -GAGUugGACCGGCUucGGCUCGa---CCa -5'
19270 5' -58 NC_004685.1 + 5511 0.72 0.276926
Target:  5'- aUCGccGCCgagcGGCCGggGUucuaCGAGCUGGUc -3'
miRNA:   3'- gAGU--UGGa---CCGGCuuCG----GCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 6527 0.7 0.368794
Target:  5'- gCUCAGCaacaUGacGCCGAcGGCCGAGCUGa- -3'
miRNA:   3'- -GAGUUGg---AC--CGGCU-UCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 6643 0.72 0.276926
Target:  5'- --aGACCUGGaaGAGGCCGGuCUGGUg -3'
miRNA:   3'- gagUUGGACCggCUUCGGCUcGACCA- -5'
19270 5' -58 NC_004685.1 + 7224 0.7 0.36039
Target:  5'- -cCAGCUUGacgaGCUGAucGCCGAGCUGGa -3'
miRNA:   3'- gaGUUGGAC----CGGCUu-CGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 8112 0.74 0.20963
Target:  5'- gUCAACgcgCUGGCCGAGGCCGGGUUc-- -3'
miRNA:   3'- gAGUUG---GACCGGCUUCGGCUCGAcca -5'
19270 5' -58 NC_004685.1 + 8474 0.77 0.140919
Target:  5'- -gCGGCCgcgcUGGCCGAGGCUGAGCgccGGUg -3'
miRNA:   3'- gaGUUGG----ACCGGCUUCGGCUCGa--CCA- -5'
19270 5' -58 NC_004685.1 + 9998 0.76 0.169972
Target:  5'- gCUCAcCCUGucGCCGAugcucacGCCGAGCUGGg -3'
miRNA:   3'- -GAGUuGGAC--CGGCUu------CGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 11400 0.67 0.51989
Target:  5'- gCUCGACCUguaGGaCGaAAGCCGAacaggGCUGGg -3'
miRNA:   3'- -GAGUUGGA---CCgGC-UUCGGCU-----CGACCa -5'
19270 5' -58 NC_004685.1 + 12136 0.73 0.255089
Target:  5'- aUCGGCCUGGCgCGcAGCucguuccuggacuuCGAGCUGGa -3'
miRNA:   3'- gAGUUGGACCG-GCuUCG--------------GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 12637 0.66 0.582748
Target:  5'- aUCGACC-GGCUGcucgccGCCGGGCgGGUc -3'
miRNA:   3'- gAGUUGGaCCGGCuu----CGGCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 13309 0.68 0.479489
Target:  5'- -aCGugCUGGUCaagcuGGCUGAGCUGGc -3'
miRNA:   3'- gaGUugGACCGGcu---UCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 14303 0.68 0.479489
Target:  5'- -gCGACgCUGGCCGAGGCU--GCgGGUa -3'
miRNA:   3'- gaGUUG-GACCGGCUUCGGcuCGaCCA- -5'
19270 5' -58 NC_004685.1 + 14418 0.68 0.499508
Target:  5'- gUCAGCUgcgcGCCGAGGCCGAgGCgaaGGa -3'
miRNA:   3'- gAGUUGGac--CGGCUUCGGCU-CGa--CCa -5'
19270 5' -58 NC_004685.1 + 14475 0.75 0.179208
Target:  5'- uUCGACCUGGCCGccuGGuCCGAcCUGGg -3'
miRNA:   3'- gAGUUGGACCGGCu--UC-GGCUcGACCa -5'
19270 5' -58 NC_004685.1 + 14771 0.67 0.572132
Target:  5'- aUCGACCUGGagGccGCUGGGCUGa- -3'
miRNA:   3'- gAGUUGGACCggCuuCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 15546 0.66 0.592336
Target:  5'- aUCAaggaGCCgauaGGCCGAGGCCGAcccaccgaacuguGCUcGGa -3'
miRNA:   3'- gAGU----UGGa---CCGGCUUCGGCU-------------CGA-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.