miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 40722 0.66 0.614799
Target:  5'- -aCGACCcgaaggGGCCGugggagGGGCCGGGgUGGa -3'
miRNA:   3'- gaGUUGGa-----CCGGC------UUCGGCUCgACCa -5'
19270 5' -58 NC_004685.1 + 29886 0.68 0.469627
Target:  5'- aCUCGcgcGgCUGGCUGAGGCCuGGCUGu- -3'
miRNA:   3'- -GAGU---UgGACCGGCUUCGGcUCGACca -5'
19270 5' -58 NC_004685.1 + 34929 0.68 0.48945
Target:  5'- aCUCGucAUCUGGCCGAcgugguGGCUGccGCUGGc -3'
miRNA:   3'- -GAGU--UGGACCGGCU------UCGGCu-CGACCa -5'
19270 5' -58 NC_004685.1 + 21993 0.68 0.48945
Target:  5'- gUCcACCUcguaagggGGCCGAauGGCUGAGCUGa- -3'
miRNA:   3'- gAGuUGGA--------CCGGCU--UCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 40402 0.67 0.540591
Target:  5'- gCUCGGCCUGGaCGAGaCCGAG-UGGc -3'
miRNA:   3'- -GAGUUGGACCgGCUUcGGCUCgACCa -5'
19270 5' -58 NC_004685.1 + 29505 0.67 0.561562
Target:  5'- cCUCGACCUGacucGCCaGGguucucugcucuGGCCGAGCaUGGc -3'
miRNA:   3'- -GAGUUGGAC----CGG-CU------------UCGGCUCG-ACCa -5'
19270 5' -58 NC_004685.1 + 16527 0.67 0.572132
Target:  5'- -cCAGCCUgcGGCCGAAGgCGAccGC-GGUg -3'
miRNA:   3'- gaGUUGGA--CCGGCUUCgGCU--CGaCCA- -5'
19270 5' -58 NC_004685.1 + 2241 0.66 0.593403
Target:  5'- --aGACCUGccuGCCGcccGGCCGGGCUGa- -3'
miRNA:   3'- gagUUGGAC---CGGCu--UCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 46763 0.66 0.614799
Target:  5'- --gGugCUGGCCGucaucGGCCGGGgaUUGGUg -3'
miRNA:   3'- gagUugGACCGGCu----UCGGCUC--GACCA- -5'
19270 5' -58 NC_004685.1 + 2300 0.68 0.45987
Target:  5'- gUCGACCgGGCCGAGGCuCcAGC-GGa -3'
miRNA:   3'- gAGUUGGaCCGGCUUCG-GcUCGaCCa -5'
19270 5' -58 NC_004685.1 + 28259 0.69 0.450221
Target:  5'- gUCAACC-GGCaGcGGCgCGAGCUGGa -3'
miRNA:   3'- gAGUUGGaCCGgCuUCG-GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 34598 0.71 0.343986
Target:  5'- ---cGCCUGGCCGAGGaaGAGUcGGUc -3'
miRNA:   3'- gaguUGGACCGGCUUCggCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 38327 0.82 0.061355
Target:  5'- --gGGCCUGGCCGAucuGCgCGAGCUGGUc -3'
miRNA:   3'- gagUUGGACCGGCUu--CG-GCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 8474 0.77 0.140919
Target:  5'- -gCGGCCgcgcUGGCCGAGGCUGAGCgccGGUg -3'
miRNA:   3'- gaGUUGG----ACCGGCUUCGGCUCGa--CCA- -5'
19270 5' -58 NC_004685.1 + 9998 0.76 0.169972
Target:  5'- gCUCAcCCUGucGCCGAugcucacGCCGAGCUGGg -3'
miRNA:   3'- -GAGUuGGAC--CGGCUu------CGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 14475 0.75 0.179208
Target:  5'- uUCGACCUGGCCGccuGGuCCGAcCUGGg -3'
miRNA:   3'- gAGUUGGACCGGCu--UC-GGCUcGACCa -5'
19270 5' -58 NC_004685.1 + 8112 0.74 0.20963
Target:  5'- gUCAACgcgCUGGCCGAGGCCGGGUUc-- -3'
miRNA:   3'- gAGUUG---GACCGGCUUCGGCUCGAcca -5'
19270 5' -58 NC_004685.1 + 45201 0.74 0.215114
Target:  5'- -gCGACCUGuacGCCGcGGCCGAGCcgGGUg -3'
miRNA:   3'- gaGUUGGAC---CGGCuUCGGCUCGa-CCA- -5'
19270 5' -58 NC_004685.1 + 29440 0.73 0.244401
Target:  5'- aCUCAgaACUUGGCCGAGGgguuCCGgcAGCUGGa -3'
miRNA:   3'- -GAGU--UGGACCGGCUUC----GGC--UCGACCa -5'
19270 5' -58 NC_004685.1 + 36780 0.73 0.250642
Target:  5'- uUCGACUggcGGCCcGAGCCGcagGGCUGGUg -3'
miRNA:   3'- gAGUUGGa--CCGGcUUCGGC---UCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.