miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 16482 0.66 0.636252
Target:  5'- -aCAuCCUGGUC--AGCCaaGAGCUGGUc -3'
miRNA:   3'- gaGUuGGACCGGcuUCGG--CUCGACCA- -5'
19270 5' -58 NC_004685.1 + 37152 0.68 0.479489
Target:  5'- --uGGCCgGGCCGAcGCCGGGaaGGUu -3'
miRNA:   3'- gagUUGGaCCGGCUuCGGCUCgaCCA- -5'
19270 5' -58 NC_004685.1 + 13309 0.68 0.479489
Target:  5'- -aCGugCUGGUCaagcuGGCUGAGCUGGc -3'
miRNA:   3'- gaGUugGACCGGcu---UCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 67827 1.07 0.000977
Target:  5'- cCUCAACCUGGCCGAAGCCGAGCUGGUc -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGGCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 27187 0.66 0.60409
Target:  5'- gUCAgcACCggcGGCUgccguGAAGCUGAaGCUGGUg -3'
miRNA:   3'- gAGU--UGGa--CCGG-----CUUCGGCU-CGACCA- -5'
19270 5' -58 NC_004685.1 + 50024 0.66 0.593403
Target:  5'- uUCG--CUGGCCGAAGUcaacguuguCGAGUUGGa -3'
miRNA:   3'- gAGUugGACCGGCUUCG---------GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 15546 0.66 0.592336
Target:  5'- aUCAaggaGCCgauaGGCCGAGGCCGAcccaccgaacuguGCUcGGa -3'
miRNA:   3'- gAGU----UGGa---CCGGCUUCGGCU-------------CGA-CCa -5'
19270 5' -58 NC_004685.1 + 12637 0.66 0.582748
Target:  5'- aUCGACC-GGCUGcucgccGCCGGGCgGGUc -3'
miRNA:   3'- gAGUUGGaCCGGCuu----CGGCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 26877 0.67 0.561562
Target:  5'- -gCGACCUGGCCGgGAGCCaGGGUc--- -3'
miRNA:   3'- gaGUUGGACCGGC-UUCGG-CUCGacca -5'
19270 5' -58 NC_004685.1 + 14418 0.68 0.499508
Target:  5'- gUCAGCUgcgcGCCGAGGCCGAgGCgaaGGa -3'
miRNA:   3'- gAGUUGGac--CGGCUUCGGCU-CGa--CCa -5'
19270 5' -58 NC_004685.1 + 11400 0.67 0.51989
Target:  5'- gCUCGACCUguaGGaCGaAAGCCGAacaggGCUGGg -3'
miRNA:   3'- -GAGUUGGA---CCgGC-UUCGGCU-----CGACCa -5'
19270 5' -58 NC_004685.1 + 20361 0.67 0.561562
Target:  5'- gUCGGagcugCUGGCCGcGGCCGAGCa--- -3'
miRNA:   3'- gAGUUg----GACCGGCuUCGGCUCGacca -5'
19270 5' -58 NC_004685.1 + 17942 0.66 0.614799
Target:  5'- -cCGAUCUGGCCGGAGuUCGAGUc--- -3'
miRNA:   3'- gaGUUGGACCGGCUUC-GGCUCGacca -5'
19270 5' -58 NC_004685.1 + 68896 0.68 0.509656
Target:  5'- gCUCAACgaGG----AGCCGAGCUGGa -3'
miRNA:   3'- -GAGUUGgaCCggcuUCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 52408 0.66 0.614799
Target:  5'- gCUCGaaGCCgUGGCCGAcgacccuccAGCUGAuGCcGGUg -3'
miRNA:   3'- -GAGU--UGG-ACCGGCU---------UCGGCU-CGaCCA- -5'
19270 5' -58 NC_004685.1 + 14771 0.67 0.572132
Target:  5'- aUCGACCUGGagGccGCUGGGCUGa- -3'
miRNA:   3'- gAGUUGGACCggCuuCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 67069 0.68 0.499508
Target:  5'- -gCAGCCgucgcuGCCGAgcaGGCCGAGC-GGUa -3'
miRNA:   3'- gaGUUGGac----CGGCU---UCGGCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 14303 0.68 0.479489
Target:  5'- -gCGACgCUGGCCGAGGCU--GCgGGUa -3'
miRNA:   3'- gaGUUG-GACCGGCUUCGGcuCGaCCA- -5'
19270 5' -58 NC_004685.1 + 54848 0.66 0.614799
Target:  5'- gCUCGGCCUGGUCGAGGU--GGCa--- -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGgcUCGacca -5'
19270 5' -58 NC_004685.1 + 21350 0.66 0.593403
Target:  5'- -gCGACg-GGCCGAuucaGGCCGAcggcaGCUGGa -3'
miRNA:   3'- gaGUUGgaCCGGCU----UCGGCU-----CGACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.