miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 45201 0.74 0.215114
Target:  5'- -gCGACCUGuacGCCGcGGCCGAGCcgGGUg -3'
miRNA:   3'- gaGUUGGAC---CGGCuUCGGCUCGa-CCA- -5'
19270 5' -58 NC_004685.1 + 29440 0.73 0.244401
Target:  5'- aCUCAgaACUUGGCCGAGGgguuCCGgcAGCUGGa -3'
miRNA:   3'- -GAGU--UGGACCGGCUUC----GGC--UCGACCa -5'
19270 5' -58 NC_004685.1 + 36780 0.73 0.250642
Target:  5'- uUCGACUggcGGCCcGAGCCGcagGGCUGGUg -3'
miRNA:   3'- gAGUUGGa--CCGGcUUCGGC---UCGACCA- -5'
19270 5' -58 NC_004685.1 + 34598 0.71 0.343986
Target:  5'- ---cGCCUGGCCGAGGaaGAGUcGGUc -3'
miRNA:   3'- gaguUGGACCGGCUUCggCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 28259 0.69 0.450221
Target:  5'- gUCAACC-GGCaGcGGCgCGAGCUGGa -3'
miRNA:   3'- gAGUUGGaCCGgCuUCG-GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 14771 0.67 0.572132
Target:  5'- aUCGACCUGGagGccGCUGGGCUGa- -3'
miRNA:   3'- gAGUUGGACCggCuuCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 20361 0.67 0.561562
Target:  5'- gUCGGagcugCUGGCCGcGGCCGAGCa--- -3'
miRNA:   3'- gAGUUg----GACCGGCuUCGGCUCGacca -5'
19270 5' -58 NC_004685.1 + 26877 0.67 0.561562
Target:  5'- -gCGACCUGGCCGgGAGCCaGGGUc--- -3'
miRNA:   3'- gaGUUGGACCGGC-UUCGG-CUCGacca -5'
19270 5' -58 NC_004685.1 + 55221 0.67 0.529169
Target:  5'- -gCGGCCaGGUCGAAGCUGGacgacucGCUGGc -3'
miRNA:   3'- gaGUUGGaCCGGCUUCGGCU-------CGACCa -5'
19270 5' -58 NC_004685.1 + 11400 0.67 0.51989
Target:  5'- gCUCGACCUguaGGaCGaAAGCCGAacaggGCUGGg -3'
miRNA:   3'- -GAGUUGGA---CCgGC-UUCGGCU-----CGACCa -5'
19270 5' -58 NC_004685.1 + 68896 0.68 0.509656
Target:  5'- gCUCAACgaGG----AGCCGAGCUGGa -3'
miRNA:   3'- -GAGUUGgaCCggcuUCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 12637 0.66 0.582748
Target:  5'- aUCGACC-GGCUGcucgccGCCGGGCgGGUc -3'
miRNA:   3'- gAGUUGGaCCGGCuu----CGGCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 15546 0.66 0.592336
Target:  5'- aUCAaggaGCCgauaGGCCGAGGCCGAcccaccgaacuguGCUcGGa -3'
miRNA:   3'- gAGU----UGGa---CCGGCUUCGGCU-------------CGA-CCa -5'
19270 5' -58 NC_004685.1 + 21350 0.66 0.593403
Target:  5'- -gCGACg-GGCCGAuucaGGCCGAcggcaGCUGGa -3'
miRNA:   3'- gaGUUGgaCCGGCU----UCGGCU-----CGACCa -5'
19270 5' -58 NC_004685.1 + 50024 0.66 0.593403
Target:  5'- uUCG--CUGGCCGAAGUcaacguuguCGAGUUGGa -3'
miRNA:   3'- gAGUugGACCGGCUUCG---------GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 27187 0.66 0.60409
Target:  5'- gUCAgcACCggcGGCUgccguGAAGCUGAaGCUGGUg -3'
miRNA:   3'- gAGU--UGGa--CCGG-----CUUCGGCU-CGACCA- -5'
19270 5' -58 NC_004685.1 + 54848 0.66 0.614799
Target:  5'- gCUCGGCCUGGUCGAGGU--GGCa--- -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGgcUCGacca -5'
19270 5' -58 NC_004685.1 + 52408 0.66 0.614799
Target:  5'- gCUCGaaGCCgUGGCCGAcgacccuccAGCUGAuGCcGGUg -3'
miRNA:   3'- -GAGU--UGG-ACCGGCU---------UCGGCU-CGaCCA- -5'
19270 5' -58 NC_004685.1 + 17942 0.66 0.614799
Target:  5'- -cCGAUCUGGCCGGAGuUCGAGUc--- -3'
miRNA:   3'- gaGUUGGACCGGCUUC-GGCUCGacca -5'
19270 5' -58 NC_004685.1 + 67827 1.07 0.000977
Target:  5'- cCUCAACCUGGCCGAAGCCGAGCUGGUc -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGGCUCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.