miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 16252 0.66 0.626596
Target:  5'- gCUCAGCgaGaCCGAGGCCGucgaccugauggaccGCUGGa -3'
miRNA:   3'- -GAGUUGgaCcGGCUUCGGCu--------------CGACCa -5'
19270 5' -58 NC_004685.1 + 16482 0.66 0.636252
Target:  5'- -aCAuCCUGGUC--AGCCaaGAGCUGGUc -3'
miRNA:   3'- gaGUuGGACCGGcuUCGG--CUCGACCA- -5'
19270 5' -58 NC_004685.1 + 16527 0.67 0.572132
Target:  5'- -cCAGCCUgcGGCCGAAGgCGAccGC-GGUg -3'
miRNA:   3'- gaGUUGGA--CCGGCUUCgGCU--CGaCCA- -5'
19270 5' -58 NC_004685.1 + 17073 0.69 0.412784
Target:  5'- -aCAGCCUGuCCGAGauuGCCuacGAGCUGGUc -3'
miRNA:   3'- gaGUUGGACcGGCUU---CGG---CUCGACCA- -5'
19270 5' -58 NC_004685.1 + 17942 0.66 0.614799
Target:  5'- -cCGAUCUGGCCGGAGuUCGAGUc--- -3'
miRNA:   3'- gaGUUGGACCGGCUUC-GGCUCGacca -5'
19270 5' -58 NC_004685.1 + 19148 0.76 0.156915
Target:  5'- -aCAACCUGGUCGgcGUCGGGCUGuGg -3'
miRNA:   3'- gaGUUGGACCGGCuuCGGCUCGAC-Ca -5'
19270 5' -58 NC_004685.1 + 20361 0.67 0.561562
Target:  5'- gUCGGagcugCUGGCCGcGGCCGAGCa--- -3'
miRNA:   3'- gAGUUg----GACCGGCuUCGGCUCGacca -5'
19270 5' -58 NC_004685.1 + 21350 0.66 0.593403
Target:  5'- -gCGACg-GGCCGAuucaGGCCGAcggcaGCUGGa -3'
miRNA:   3'- gaGUUGgaCCGGCU----UCGGCU-----CGACCa -5'
19270 5' -58 NC_004685.1 + 21993 0.68 0.48945
Target:  5'- gUCcACCUcguaagggGGCCGAauGGCUGAGCUGa- -3'
miRNA:   3'- gAGuUGGA--------CCGGCU--UCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 26877 0.67 0.561562
Target:  5'- -gCGACCUGGCCGgGAGCCaGGGUc--- -3'
miRNA:   3'- gaGUUGGACCGGC-UUCGG-CUCGacca -5'
19270 5' -58 NC_004685.1 + 27187 0.66 0.60409
Target:  5'- gUCAgcACCggcGGCUgccguGAAGCUGAaGCUGGUg -3'
miRNA:   3'- gAGU--UGGa--CCGG-----CUUCGGCU-CGACCA- -5'
19270 5' -58 NC_004685.1 + 28259 0.69 0.450221
Target:  5'- gUCAACC-GGCaGcGGCgCGAGCUGGa -3'
miRNA:   3'- gAGUUGGaCCGgCuUCG-GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 29440 0.73 0.244401
Target:  5'- aCUCAgaACUUGGCCGAGGgguuCCGgcAGCUGGa -3'
miRNA:   3'- -GAGU--UGGACCGGCUUC----GGC--UCGACCa -5'
19270 5' -58 NC_004685.1 + 29505 0.67 0.561562
Target:  5'- cCUCGACCUGacucGCCaGGguucucugcucuGGCCGAGCaUGGc -3'
miRNA:   3'- -GAGUUGGAC----CGG-CU------------UCGGCUCG-ACCa -5'
19270 5' -58 NC_004685.1 + 29886 0.68 0.469627
Target:  5'- aCUCGcgcGgCUGGCUGAGGCCuGGCUGu- -3'
miRNA:   3'- -GAGU---UgGACCGGCUUCGGcUCGACca -5'
19270 5' -58 NC_004685.1 + 31396 0.68 0.45987
Target:  5'- cCUC-GCCgacgauGCCGGAGaCGAGCUGGUc -3'
miRNA:   3'- -GAGuUGGac----CGGCUUCgGCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 32862 0.69 0.440685
Target:  5'- aUCAGCCUGcacGuuGggGCCGGuGCcGGUg -3'
miRNA:   3'- gAGUUGGAC---CggCuuCGGCU-CGaCCA- -5'
19270 5' -58 NC_004685.1 + 34598 0.71 0.343986
Target:  5'- ---cGCCUGGCCGAGGaaGAGUcGGUc -3'
miRNA:   3'- gaguUGGACCGGCUUCggCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 34929 0.68 0.48945
Target:  5'- aCUCGucAUCUGGCCGAcgugguGGCUGccGCUGGc -3'
miRNA:   3'- -GAGU--UGGACCGGCU------UCGGCu-CGACCa -5'
19270 5' -58 NC_004685.1 + 36585 0.83 0.047533
Target:  5'- aUCAACCUGGCCGAcGCCGAGgacCUGGc -3'
miRNA:   3'- gAGUUGGACCGGCUuCGGCUC---GACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.