miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 68896 0.68 0.509656
Target:  5'- gCUCAACgaGG----AGCCGAGCUGGa -3'
miRNA:   3'- -GAGUUGgaCCggcuUCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 68392 0.72 0.290163
Target:  5'- cCUCGACggaguguCUGauGCCGuGGCCGAGCUGGc -3'
miRNA:   3'- -GAGUUG-------GAC--CGGCuUCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 67827 1.07 0.000977
Target:  5'- cCUCAACCUGGCCGAAGCCGAGCUGGUc -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGGCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 67313 0.72 0.305364
Target:  5'- gCUCGugCUGGCCGAAcGCUG-GCccggGGUg -3'
miRNA:   3'- -GAGUugGACCGGCUU-CGGCuCGa---CCA- -5'
19270 5' -58 NC_004685.1 + 67069 0.68 0.499508
Target:  5'- -gCAGCCgucgcuGCCGAgcaGGCCGAGC-GGUa -3'
miRNA:   3'- gaGUUGGac----CGGCU---UCGGCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 55618 0.69 0.421964
Target:  5'- ---uGCCUcGGCCGAAGCCGcGCUcgcGGg -3'
miRNA:   3'- gaguUGGA-CCGGCUUCGGCuCGA---CCa -5'
19270 5' -58 NC_004685.1 + 55268 0.66 0.625523
Target:  5'- cCUCGGCCUcGGCgCGcAGCUGAcGCUGc- -3'
miRNA:   3'- -GAGUUGGA-CCG-GCuUCGGCU-CGACca -5'
19270 5' -58 NC_004685.1 + 55221 0.67 0.529169
Target:  5'- -gCGGCCaGGUCGAAGCUGGacgacucGCUGGc -3'
miRNA:   3'- gaGUUGGaCCGGCUUCGGCU-------CGACCa -5'
19270 5' -58 NC_004685.1 + 54920 0.71 0.35212
Target:  5'- gUCGGCUUGGCUG-AGCC--GCUGGUa -3'
miRNA:   3'- gAGUUGGACCGGCuUCGGcuCGACCA- -5'
19270 5' -58 NC_004685.1 + 54848 0.66 0.614799
Target:  5'- gCUCGGCCUGGUCGAGGU--GGCa--- -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGgcUCGacca -5'
19270 5' -58 NC_004685.1 + 52408 0.66 0.614799
Target:  5'- gCUCGaaGCCgUGGCCGAcgacccuccAGCUGAuGCcGGUg -3'
miRNA:   3'- -GAGU--UGG-ACCGGCU---------UCGGCU-CGaCCA- -5'
19270 5' -58 NC_004685.1 + 50024 0.66 0.593403
Target:  5'- uUCG--CUGGCCGAAGUcaacguuguCGAGUUGGa -3'
miRNA:   3'- gAGUugGACCGGCUUCG---------GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 47817 0.68 0.45987
Target:  5'- gCUCAGCCUcgGGCUuGGGCuCGGGCUuGGg -3'
miRNA:   3'- -GAGUUGGA--CCGGcUUCG-GCUCGA-CCa -5'
19270 5' -58 NC_004685.1 + 46763 0.66 0.614799
Target:  5'- --gGugCUGGCCGucaucGGCCGGGgaUUGGUg -3'
miRNA:   3'- gagUugGACCGGCu----UCGGCUC--GACCA- -5'
19270 5' -58 NC_004685.1 + 45954 0.66 0.625523
Target:  5'- -gCGACgCUGGUgGAGcagguGCgCGGGCUGGUg -3'
miRNA:   3'- gaGUUG-GACCGgCUU-----CG-GCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 45201 0.74 0.215114
Target:  5'- -gCGACCUGuacGCCGcGGCCGAGCcgGGUg -3'
miRNA:   3'- gaGUUGGAC---CGGCuUCGGCUCGa-CCA- -5'
19270 5' -58 NC_004685.1 + 44331 0.66 0.625523
Target:  5'- -gCAcCCUGGUCGAcgcgguGGCCGcgaucggggagaAGCUGGg -3'
miRNA:   3'- gaGUuGGACCGGCU------UCGGC------------UCGACCa -5'
19270 5' -58 NC_004685.1 + 40722 0.66 0.614799
Target:  5'- -aCGACCcgaaggGGCCGugggagGGGCCGGGgUGGa -3'
miRNA:   3'- gaGUUGGa-----CCGGC------UUCGGCUCgACCa -5'
19270 5' -58 NC_004685.1 + 40402 0.67 0.540591
Target:  5'- gCUCGGCCUGGaCGAGaCCGAG-UGGc -3'
miRNA:   3'- -GAGUUGGACCgGCUUcGGCUCgACCa -5'
19270 5' -58 NC_004685.1 + 38327 0.82 0.061355
Target:  5'- --gGGCCUGGCCGAucuGCgCGAGCUGGUc -3'
miRNA:   3'- gagUUGGACCGGCUu--CG-GCUCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.