miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 29505 0.67 0.561562
Target:  5'- cCUCGACCUGacucGCCaGGguucucugcucuGGCCGAGCaUGGc -3'
miRNA:   3'- -GAGUUGGAC----CGG-CU------------UCGGCUCG-ACCa -5'
19270 5' -58 NC_004685.1 + 40402 0.67 0.540591
Target:  5'- gCUCGGCCUGGaCGAGaCCGAG-UGGc -3'
miRNA:   3'- -GAGUUGGACCgGCUUcGGCUCgACCa -5'
19270 5' -58 NC_004685.1 + 55221 0.67 0.529169
Target:  5'- -gCGGCCaGGUCGAAGCUGGacgacucGCUGGc -3'
miRNA:   3'- gaGUUGGaCCGGCUUCGGCU-------CGACCa -5'
19270 5' -58 NC_004685.1 + 11400 0.67 0.51989
Target:  5'- gCUCGACCUguaGGaCGaAAGCCGAacaggGCUGGg -3'
miRNA:   3'- -GAGUUGGA---CCgGC-UUCGGCU-----CGACCa -5'
19270 5' -58 NC_004685.1 + 68896 0.68 0.509656
Target:  5'- gCUCAACgaGG----AGCCGAGCUGGa -3'
miRNA:   3'- -GAGUUGgaCCggcuUCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 14418 0.68 0.499508
Target:  5'- gUCAGCUgcgcGCCGAGGCCGAgGCgaaGGa -3'
miRNA:   3'- gAGUUGGac--CGGCUUCGGCU-CGa--CCa -5'
19270 5' -58 NC_004685.1 + 67069 0.68 0.499508
Target:  5'- -gCAGCCgucgcuGCCGAgcaGGCCGAGC-GGUa -3'
miRNA:   3'- gaGUUGGac----CGGCU---UCGGCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 21993 0.68 0.48945
Target:  5'- gUCcACCUcguaagggGGCCGAauGGCUGAGCUGa- -3'
miRNA:   3'- gAGuUGGA--------CCGGCU--UCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 34929 0.68 0.48945
Target:  5'- aCUCGucAUCUGGCCGAcgugguGGCUGccGCUGGc -3'
miRNA:   3'- -GAGU--UGGACCGGCU------UCGGCu-CGACCa -5'
19270 5' -58 NC_004685.1 + 37152 0.68 0.479489
Target:  5'- --uGGCCgGGCCGAcGCCGGGaaGGUu -3'
miRNA:   3'- gagUUGGaCCGGCUuCGGCUCgaCCA- -5'
19270 5' -58 NC_004685.1 + 14303 0.68 0.479489
Target:  5'- -gCGACgCUGGCCGAGGCU--GCgGGUa -3'
miRNA:   3'- gaGUUG-GACCGGCUUCGGcuCGaCCA- -5'
19270 5' -58 NC_004685.1 + 13309 0.68 0.479489
Target:  5'- -aCGugCUGGUCaagcuGGCUGAGCUGGc -3'
miRNA:   3'- gaGUugGACCGGcu---UCGGCUCGACCa -5'
19270 5' -58 NC_004685.1 + 29886 0.68 0.469627
Target:  5'- aCUCGcgcGgCUGGCUGAGGCCuGGCUGu- -3'
miRNA:   3'- -GAGU---UgGACCGGCUUCGGcUCGACca -5'
19270 5' -58 NC_004685.1 + 31396 0.68 0.45987
Target:  5'- cCUC-GCCgacgauGCCGGAGaCGAGCUGGUc -3'
miRNA:   3'- -GAGuUGGac----CGGCUUCgGCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 47817 0.68 0.45987
Target:  5'- gCUCAGCCUcgGGCUuGGGCuCGGGCUuGGg -3'
miRNA:   3'- -GAGUUGGA--CCGGcUUCG-GCUCGA-CCa -5'
19270 5' -58 NC_004685.1 + 2300 0.68 0.45987
Target:  5'- gUCGACCgGGCCGAGGCuCcAGC-GGa -3'
miRNA:   3'- gAGUUGGaCCGGCUUCG-GcUCGaCCa -5'
19270 5' -58 NC_004685.1 + 28259 0.69 0.450221
Target:  5'- gUCAACC-GGCaGcGGCgCGAGCUGGa -3'
miRNA:   3'- gAGUUGGaCCGgCuUCG-GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 32862 0.69 0.440685
Target:  5'- aUCAGCCUGcacGuuGggGCCGGuGCcGGUg -3'
miRNA:   3'- gAGUUGGAC---CggCuuCGGCU-CGaCCA- -5'
19270 5' -58 NC_004685.1 + 55618 0.69 0.421964
Target:  5'- ---uGCCUcGGCCGAAGCCGcGCUcgcGGg -3'
miRNA:   3'- gaguUGGA-CCGGCUUCGGCuCGA---CCa -5'
19270 5' -58 NC_004685.1 + 17073 0.69 0.412784
Target:  5'- -aCAGCCUGuCCGAGauuGCCuacGAGCUGGUc -3'
miRNA:   3'- gaGUUGGACcGGCUU---CGG---CUCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.