miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19272 5' -58.2 NC_004685.1 + 67024 1.1 0.000665
Target:  5'- uGCUGCGGUCGCGACGACCCGCACUACc -3'
miRNA:   3'- -CGACGCCAGCGCUGCUGGGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 37396 0.8 0.091284
Target:  5'- cGCUGCGGUCGCcGCGccaccaggaccGCCCGCGCcACc -3'
miRNA:   3'- -CGACGCCAGCGcUGC-----------UGGGCGUGaUG- -5'
19272 5' -58.2 NC_004685.1 + 11576 0.79 0.110449
Target:  5'- gGCUGUccacggcaGGUCGCGGCGAgCCGCGCa-- -3'
miRNA:   3'- -CGACG--------CCAGCGCUGCUgGGCGUGaug -5'
19272 5' -58.2 NC_004685.1 + 112 0.77 0.140635
Target:  5'- cGCUagGCGGUaGCGGCGACCgGCGCggGCg -3'
miRNA:   3'- -CGA--CGCCAgCGCUGCUGGgCGUGa-UG- -5'
19272 5' -58.2 NC_004685.1 + 28820 0.75 0.197611
Target:  5'- cGC-GCGGccCGCGACGccaGCaCCGCGCUGCa -3'
miRNA:   3'- -CGaCGCCa-GCGCUGC---UG-GGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 17355 0.74 0.230155
Target:  5'- --aGCGGgCGCGGCaacuGGCCCGCuACUACg -3'
miRNA:   3'- cgaCGCCaGCGCUG----CUGGGCG-UGAUG- -5'
19272 5' -58.2 NC_004685.1 + 11718 0.73 0.287318
Target:  5'- gGCUGUGcGcugacacCGCGcACGGCCCGCugUGCc -3'
miRNA:   3'- -CGACGC-Ca------GCGC-UGCUGGGCGugAUG- -5'
19272 5' -58.2 NC_004685.1 + 12502 0.73 0.287318
Target:  5'- --gGUGGUgCGCGAgGAgCCGCugUGCa -3'
miRNA:   3'- cgaCGCCA-GCGCUgCUgGGCGugAUG- -5'
19272 5' -58.2 NC_004685.1 + 41334 0.72 0.316109
Target:  5'- aCUGCGGUCaGCGGCGACaucuCCgagGCGCUGg -3'
miRNA:   3'- cGACGCCAG-CGCUGCUG----GG---CGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 11073 0.71 0.3313
Target:  5'- --gGUGGcCGCGGCGACaCUGCGCaGCa -3'
miRNA:   3'- cgaCGCCaGCGCUGCUG-GGCGUGaUG- -5'
19272 5' -58.2 NC_004685.1 + 19345 0.71 0.347023
Target:  5'- cGCUGUGGgCGCGACGACagggGCACc-- -3'
miRNA:   3'- -CGACGCCaGCGCUGCUGgg--CGUGaug -5'
19272 5' -58.2 NC_004685.1 + 65368 0.71 0.363271
Target:  5'- cCUGCGGcUCGCGGagaGGCCCGC-Cg-- -3'
miRNA:   3'- cGACGCC-AGCGCUg--CUGGGCGuGaug -5'
19272 5' -58.2 NC_004685.1 + 61939 0.7 0.406146
Target:  5'- -aUGCGGUCGUGcACGuCCUG-GCUGCg -3'
miRNA:   3'- cgACGCCAGCGC-UGCuGGGCgUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 55671 0.7 0.415095
Target:  5'- cGCUGCGaGggUGCGACGcugGCCgGCACggACa -3'
miRNA:   3'- -CGACGC-Ca-GCGCUGC---UGGgCGUGa-UG- -5'
19272 5' -58.2 NC_004685.1 + 36284 0.7 0.424164
Target:  5'- cGCUGCGG-CGCGGCGAucauCUCGC-Cg-- -3'
miRNA:   3'- -CGACGCCaGCGCUGCU----GGGCGuGaug -5'
19272 5' -58.2 NC_004685.1 + 7776 0.69 0.452064
Target:  5'- gGCgucgGuCGGUgCGCGACGGCCUgugGCACUc- -3'
miRNA:   3'- -CGa---C-GCCA-GCGCUGCUGGG---CGUGAug -5'
19272 5' -58.2 NC_004685.1 + 44138 0.69 0.452064
Target:  5'- cGCUGCaGUcCGCGAUca-CCGUGCUGCg -3'
miRNA:   3'- -CGACGcCA-GCGCUGcugGGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 28266 0.69 0.452064
Target:  5'- gGCaGCGG-CGCGAgcuggaaGACCUGCGCUccACg -3'
miRNA:   3'- -CGaCGCCaGCGCUg------CUGGGCGUGA--UG- -5'
19272 5' -58.2 NC_004685.1 + 67269 0.69 0.452064
Target:  5'- --gGCGGcCGCGuCGuCUgGCACUGCg -3'
miRNA:   3'- cgaCGCCaGCGCuGCuGGgCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 69158 0.69 0.471211
Target:  5'- cGCUGCuGGcggGCGACGACCuCGUGCa-- -3'
miRNA:   3'- -CGACG-CCag-CGCUGCUGG-GCGUGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.