miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19272 5' -58.2 NC_004685.1 + 112 0.77 0.140635
Target:  5'- cGCUagGCGGUaGCGGCGACCgGCGCggGCg -3'
miRNA:   3'- -CGA--CGCCAgCGCUGCUGGgCGUGa-UG- -5'
19272 5' -58.2 NC_004685.1 + 193 0.67 0.551456
Target:  5'- cGC-GCGGguuucggCGCGACGAgUgCGCGCUGg -3'
miRNA:   3'- -CGaCGCCa------GCGCUGCU-GgGCGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 2662 0.67 0.572223
Target:  5'- -gUGCGGgucgUCGCGACcgcagcACCCGCugUGu -3'
miRNA:   3'- cgACGCC----AGCGCUGc-----UGGGCGugAUg -5'
19272 5' -58.2 NC_004685.1 + 2811 0.68 0.520764
Target:  5'- cGCUGUGGgacugcCGCaucGACGGCaaCCGCGuCUGCg -3'
miRNA:   3'- -CGACGCCa-----GCG---CUGCUG--GGCGU-GAUG- -5'
19272 5' -58.2 NC_004685.1 + 4756 0.66 0.618458
Target:  5'- cGCUcGUGGUCgGCG-CGcuggccggauacuguGCCCGCACUucgaGCa -3'
miRNA:   3'- -CGA-CGCCAG-CGCuGC---------------UGGGCGUGA----UG- -5'
19272 5' -58.2 NC_004685.1 + 6758 0.66 0.635361
Target:  5'- cCUGCGGUgCGCaGCGAgCCgguGCGuCUGCg -3'
miRNA:   3'- cGACGCCA-GCGcUGCUgGG---CGU-GAUG- -5'
19272 5' -58.2 NC_004685.1 + 7776 0.69 0.452064
Target:  5'- gGCgucgGuCGGUgCGCGACGGCCUgugGCACUc- -3'
miRNA:   3'- -CGa---C-GCCA-GCGCUGCUGGG---CGUGAug -5'
19272 5' -58.2 NC_004685.1 + 11073 0.71 0.3313
Target:  5'- --gGUGGcCGCGGCGACaCUGCGCaGCa -3'
miRNA:   3'- cgaCGCCaGCGCUGCUG-GGCGUGaUG- -5'
19272 5' -58.2 NC_004685.1 + 11576 0.79 0.110449
Target:  5'- gGCUGUccacggcaGGUCGCGGCGAgCCGCGCa-- -3'
miRNA:   3'- -CGACG--------CCAGCGCUGCUgGGCGUGaug -5'
19272 5' -58.2 NC_004685.1 + 11718 0.73 0.287318
Target:  5'- gGCUGUGcGcugacacCGCGcACGGCCCGCugUGCc -3'
miRNA:   3'- -CGACGC-Ca------GCGC-UGCUGGGCGugAUG- -5'
19272 5' -58.2 NC_004685.1 + 12041 0.68 0.520764
Target:  5'- aGCUcGCGGUCaacGCGGCCCGCGagGCg -3'
miRNA:   3'- -CGA-CGCCAGcgcUGCUGGGCGUgaUG- -5'
19272 5' -58.2 NC_004685.1 + 12502 0.73 0.287318
Target:  5'- --gGUGGUgCGCGAgGAgCCGCugUGCa -3'
miRNA:   3'- cgaCGCCA-GCGCUgCUgGGCGugAUG- -5'
19272 5' -58.2 NC_004685.1 + 13328 0.66 0.656474
Target:  5'- cGCcGCGGagucUgGCGAUGAgCUGCAgCUGCu -3'
miRNA:   3'- -CGaCGCC----AgCGCUGCUgGGCGU-GAUG- -5'
19272 5' -58.2 NC_004685.1 + 13688 0.67 0.593169
Target:  5'- gGCcGCGGgUGCGGCGcACCUGCAacgaGCg -3'
miRNA:   3'- -CGaCGCCaGCGCUGC-UGGGCGUga--UG- -5'
19272 5' -58.2 NC_004685.1 + 15624 0.68 0.51773
Target:  5'- cGCUcCGaGUCGCGACGgcgagccaucGCCCGCGgcauccccgcacacCUGCa -3'
miRNA:   3'- -CGAcGC-CAGCGCUGC----------UGGGCGU--------------GAUG- -5'
19272 5' -58.2 NC_004685.1 + 17355 0.74 0.230155
Target:  5'- --aGCGGgCGCGGCaacuGGCCCGCuACUACg -3'
miRNA:   3'- cgaCGCCaGCGCUG----CUGGGCG-UGAUG- -5'
19272 5' -58.2 NC_004685.1 + 19031 0.68 0.490761
Target:  5'- gGCUGCccuGUCG-GAgGGCCacuCGCACUGCg -3'
miRNA:   3'- -CGACGc--CAGCgCUgCUGG---GCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 19345 0.71 0.347023
Target:  5'- cGCUGUGGgCGCGACGACagggGCACc-- -3'
miRNA:   3'- -CGACGCCaGCGCUGCUGgg--CGUGaug -5'
19272 5' -58.2 NC_004685.1 + 19956 0.66 0.645923
Target:  5'- aGCUGCG--CGCGACGA--UGCACUGu -3'
miRNA:   3'- -CGACGCcaGCGCUGCUggGCGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 20015 0.68 0.490761
Target:  5'- uCUGCGcgaGUCG-GGCGACCCGC-CgggGCg -3'
miRNA:   3'- cGACGC---CAGCgCUGCUGGGCGuGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.