miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19272 5' -58.2 NC_004685.1 + 38747 0.66 0.624795
Target:  5'- cGCUGaGG-CG-GGCGACCUGCuggcCUACg -3'
miRNA:   3'- -CGACgCCaGCgCUGCUGGGCGu---GAUG- -5'
19272 5' -58.2 NC_004685.1 + 56167 0.68 0.500676
Target:  5'- cGgUGCcucGUCGgGGCGGuCCCGgCGCUGCa -3'
miRNA:   3'- -CgACGc--CAGCgCUGCU-GGGC-GUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 62187 0.68 0.507669
Target:  5'- gGCuUGCGGcccgCGCcuuccacccacaugGACGAgCCGUGCUGCa -3'
miRNA:   3'- -CG-ACGCCa---GCG--------------CUGCUgGGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 36371 0.68 0.541158
Target:  5'- --cGCGGUCGCcgcgcccgacGGCGGCCUGgGCaACu -3'
miRNA:   3'- cgaCGCCAGCG----------CUGCUGGGCgUGaUG- -5'
19272 5' -58.2 NC_004685.1 + 66378 0.67 0.551456
Target:  5'- uUUGCcGUCGuCGACGAUgCGCACacgGCg -3'
miRNA:   3'- cGACGcCAGC-GCUGCUGgGCGUGa--UG- -5'
19272 5' -58.2 NC_004685.1 + 2662 0.67 0.572223
Target:  5'- -gUGCGGgucgUCGCGACcgcagcACCCGCugUGu -3'
miRNA:   3'- cgACGCC----AGCGCUGc-----UGGGCGugAUg -5'
19272 5' -58.2 NC_004685.1 + 67105 0.67 0.582677
Target:  5'- gGCUGUcGUUGCGACGcUCgGCGCgGCg -3'
miRNA:   3'- -CGACGcCAGCGCUGCuGGgCGUGaUG- -5'
19272 5' -58.2 NC_004685.1 + 13688 0.67 0.593169
Target:  5'- gGCcGCGGgUGCGGCGcACCUGCAacgaGCg -3'
miRNA:   3'- -CGaCGCCaGCGCUGC-UGGGCGUga--UG- -5'
19272 5' -58.2 NC_004685.1 + 28072 0.67 0.603691
Target:  5'- gGCUGaGGUCGC--CGACgCCGaGCUGCa -3'
miRNA:   3'- -CGACgCCAGCGcuGCUG-GGCgUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 32280 0.68 0.490761
Target:  5'- cGCggGCGGUccugguggCGCGGCGACCgcaGCGgccCUGCa -3'
miRNA:   3'- -CGa-CGCCA--------GCGCUGCUGGg--CGU---GAUG- -5'
19272 5' -58.2 NC_004685.1 + 19031 0.68 0.490761
Target:  5'- gGCUGCccuGUCG-GAgGGCCacuCGCACUGCg -3'
miRNA:   3'- -CGACGc--CAGCgCUgCUGG---GCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 57257 0.69 0.480938
Target:  5'- gGCUGCcGccuucUCgGCGAUGGCCCGCACc-- -3'
miRNA:   3'- -CGACGcC-----AG-CGCUGCUGGGCGUGaug -5'
19272 5' -58.2 NC_004685.1 + 28820 0.75 0.197611
Target:  5'- cGC-GCGGccCGCGACGccaGCaCCGCGCUGCa -3'
miRNA:   3'- -CGaCGCCa-GCGCUGC---UG-GGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 12502 0.73 0.287318
Target:  5'- --gGUGGUgCGCGAgGAgCCGCugUGCa -3'
miRNA:   3'- cgaCGCCA-GCGCUgCUgGGCGugAUG- -5'
19272 5' -58.2 NC_004685.1 + 41334 0.72 0.316109
Target:  5'- aCUGCGGUCaGCGGCGACaucuCCgagGCGCUGg -3'
miRNA:   3'- cGACGCCAG-CGCUGCUG----GG---CGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 19345 0.71 0.347023
Target:  5'- cGCUGUGGgCGCGACGACagggGCACc-- -3'
miRNA:   3'- -CGACGCCaGCGCUGCUGgg--CGUGaug -5'
19272 5' -58.2 NC_004685.1 + 61939 0.7 0.406146
Target:  5'- -aUGCGGUCGUGcACGuCCUG-GCUGCg -3'
miRNA:   3'- cgACGCCAGCGC-UGCuGGGCgUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 55671 0.7 0.415095
Target:  5'- cGCUGCGaGggUGCGACGcugGCCgGCACggACa -3'
miRNA:   3'- -CGACGC-Ca-GCGCUGC---UGGgCGUGa-UG- -5'
19272 5' -58.2 NC_004685.1 + 28266 0.69 0.452064
Target:  5'- gGCaGCGG-CGCGAgcuggaaGACCUGCGCUccACg -3'
miRNA:   3'- -CGaCGCCaGCGCUg------CUGGGCGUGA--UG- -5'
19272 5' -58.2 NC_004685.1 + 22957 0.69 0.480938
Target:  5'- cGCUGcCGGUCgGUGAguaCaGCCCGaCGCUGCu -3'
miRNA:   3'- -CGAC-GCCAG-CGCU---GcUGGGC-GUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.