miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19273 5' -58.9 NC_004685.1 + 50775 0.66 0.595199
Target:  5'- cGGCCaUCAuguCCCuGGcuuCGUCACCCUc-- -3'
miRNA:   3'- -CCGG-AGU---GGGuCCu--GCAGUGGGAcuu -5'
19273 5' -58.9 NC_004685.1 + 58563 0.66 0.584627
Target:  5'- cGGCCaccgCGCCCAGGuCGaUGCCCa--- -3'
miRNA:   3'- -CCGGa---GUGGGUCCuGCaGUGGGacuu -5'
19273 5' -58.9 NC_004685.1 + 44312 0.66 0.584627
Target:  5'- uGGCCcCAgCU-GGGCGggcgCACCCUGGu -3'
miRNA:   3'- -CCGGaGUgGGuCCUGCa---GUGGGACUu -5'
19273 5' -58.9 NC_004685.1 + 51617 0.66 0.584627
Target:  5'- cGGCCcgaaGCCCAGGugGcCcacggugaaGCCCUGc- -3'
miRNA:   3'- -CCGGag--UGGGUCCugCaG---------UGGGACuu -5'
19273 5' -58.9 NC_004685.1 + 48070 0.66 0.584627
Target:  5'- cGGCUUCGCgCAGGAUGgCACCg---- -3'
miRNA:   3'- -CCGGAGUGgGUCCUGCaGUGGgacuu -5'
19273 5' -58.9 NC_004685.1 + 66406 0.66 0.563602
Target:  5'- cGGCC-CGacggcaCCAGGAUGUUGCCCa--- -3'
miRNA:   3'- -CCGGaGUg-----GGUCCUGCAGUGGGacuu -5'
19273 5' -58.9 NC_004685.1 + 61495 0.66 0.563602
Target:  5'- cGGCCgacCGCCCGGcGGCGUCGCg----- -3'
miRNA:   3'- -CCGGa--GUGGGUC-CUGCAGUGggacuu -5'
19273 5' -58.9 NC_004685.1 + 65854 0.66 0.563602
Target:  5'- cGCCgcgUACuCCAGGGCGUCccgucGCCCgacGAGa -3'
miRNA:   3'- cCGGa--GUG-GGUCCUGCAG-----UGGGa--CUU- -5'
19273 5' -58.9 NC_004685.1 + 29108 0.66 0.553164
Target:  5'- cGGCCgcgCcgGCCCAGGugGUCGacaCCg--- -3'
miRNA:   3'- -CCGGa--G--UGGGUCCugCAGUg--GGacuu -5'
19273 5' -58.9 NC_004685.1 + 39481 0.67 0.522225
Target:  5'- uGGCCgcggCGCCCAGGcCGacgagCGCgCUGGu -3'
miRNA:   3'- -CCGGa---GUGGGUCCuGCa----GUGgGACUu -5'
19273 5' -58.9 NC_004685.1 + 65931 0.67 0.522225
Target:  5'- aGCUUCGgCCGGGcgaacACGUCGCCCa--- -3'
miRNA:   3'- cCGGAGUgGGUCC-----UGCAGUGGGacuu -5'
19273 5' -58.9 NC_004685.1 + 51284 0.67 0.501974
Target:  5'- -cCCUCGCUguGcGAgGUCACCUUGAu -3'
miRNA:   3'- ccGGAGUGGguC-CUgCAGUGGGACUu -5'
19273 5' -58.9 NC_004685.1 + 46349 0.67 0.501974
Target:  5'- cGGCCUCAgacUCCAGGACcUCaggcucaucaACCUUGGg -3'
miRNA:   3'- -CCGGAGU---GGGUCCUGcAG----------UGGGACUu -5'
19273 5' -58.9 NC_004685.1 + 63021 0.68 0.462565
Target:  5'- cGGCCUUGCgCAGcGCGUCACCgaUGGc -3'
miRNA:   3'- -CCGGAGUGgGUCcUGCAGUGGg-ACUu -5'
19273 5' -58.9 NC_004685.1 + 42774 0.68 0.423923
Target:  5'- cGCCUacaacuaCACCCAGGAucCGUCggugucguggACCCUGGc -3'
miRNA:   3'- cCGGA-------GUGGGUCCU--GCAG----------UGGGACUu -5'
19273 5' -58.9 NC_004685.1 + 9041 0.69 0.415702
Target:  5'- cGGUCgUCACCCuGGACGggucgcgCACCCg--- -3'
miRNA:   3'- -CCGG-AGUGGGuCCUGCa------GUGGGacuu -5'
19273 5' -58.9 NC_004685.1 + 9973 0.69 0.389017
Target:  5'- uGGCCgacgaCGCCguGGGCGagaugcUCACCCUGu- -3'
miRNA:   3'- -CCGGa----GUGGguCCUGC------AGUGGGACuu -5'
19273 5' -58.9 NC_004685.1 + 16362 0.69 0.371863
Target:  5'- aGUCgaugagCGCCCAGGACcUCAgCCUGAu -3'
miRNA:   3'- cCGGa-----GUGGGUCCUGcAGUgGGACUu -5'
19273 5' -58.9 NC_004685.1 + 62900 0.71 0.287009
Target:  5'- uGGCUUCGaCCAGGGCGUCACgCaGAc -3'
miRNA:   3'- -CCGGAGUgGGUCCUGCAGUGgGaCUu -5'
19273 5' -58.9 NC_004685.1 + 51983 0.72 0.266679
Target:  5'- cGCCaa--CCAGGGCgGUCACCCUGAu -3'
miRNA:   3'- cCGGagugGGUCCUG-CAGUGGGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.