miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19274 3' -61.6 NC_004685.1 + 66317 1.05 0.000683
Target:  5'- gAACUACCGACUCGACCCGCCCGCCCGc -3'
miRNA:   3'- -UUGAUGGCUGAGCUGGGCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 20981 0.8 0.051005
Target:  5'- cGACUucAUCGACUCGGCCCGUCCGCUgGu -3'
miRNA:   3'- -UUGA--UGGCUGAGCUGGGCGGGCGGgC- -5'
19274 3' -61.6 NC_004685.1 + 55131 0.73 0.161225
Target:  5'- cACcACCGACUCGucuACCUGCgCGCCCu -3'
miRNA:   3'- uUGaUGGCUGAGC---UGGGCGgGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 39280 0.72 0.187948
Target:  5'- ---cGCCGugUuCGGCCCGCCCGuuggucgcggcCCCGg -3'
miRNA:   3'- uugaUGGCugA-GCUGGGCGGGC-----------GGGC- -5'
19274 3' -61.6 NC_004685.1 + 49980 0.72 0.187948
Target:  5'- aGAUgugGCCGAacgcCUCGGCCCGCCaCGgCCGc -3'
miRNA:   3'- -UUGa--UGGCU----GAGCUGGGCGG-GCgGGC- -5'
19274 3' -61.6 NC_004685.1 + 56536 0.72 0.187948
Target:  5'- gGGCUAUCGACguaggCGGCCCuccGCgUCGCCCGg -3'
miRNA:   3'- -UUGAUGGCUGa----GCUGGG---CG-GGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 39166 0.71 0.213124
Target:  5'- ---gACUGAC-CGGCCCGUUCGCCCc -3'
miRNA:   3'- uugaUGGCUGaGCUGGGCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 57463 0.71 0.22398
Target:  5'- gGGCUcuucGCuCGGCUCGaagucgaugGCCCGCCCGCUgGg -3'
miRNA:   3'- -UUGA----UG-GCUGAGC---------UGGGCGGGCGGgC- -5'
19274 3' -61.6 NC_004685.1 + 32607 0.71 0.241142
Target:  5'- ---cACCGGCacCGGCCCGCCC-CCUGg -3'
miRNA:   3'- uugaUGGCUGa-GCUGGGCGGGcGGGC- -5'
19274 3' -61.6 NC_004685.1 + 31760 0.7 0.253183
Target:  5'- cAGCU-CCGAC-C-ACCCGCCCGCUgGg -3'
miRNA:   3'- -UUGAuGGCUGaGcUGGGCGGGCGGgC- -5'
19274 3' -61.6 NC_004685.1 + 40482 0.7 0.257513
Target:  5'- cGCUGCCGcagauucaggcgcuGCUCGGCCCGCUgGCguuccuggCCGg -3'
miRNA:   3'- uUGAUGGC--------------UGAGCUGGGCGGgCG--------GGC- -5'
19274 3' -61.6 NC_004685.1 + 37957 0.7 0.259387
Target:  5'- ----cCCGGgUUGAUCUGCCCGCCCc -3'
miRNA:   3'- uugauGGCUgAGCUGGGCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 25355 0.7 0.278743
Target:  5'- cGGCcACCGcgUCGACCagggugCGCCCGCCCa -3'
miRNA:   3'- -UUGaUGGCugAGCUGG------GCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 30131 0.69 0.285446
Target:  5'- cGCgGCCGcACUCGGCCCGgCaGCCCc -3'
miRNA:   3'- uUGaUGGC-UGAGCUGGGCgGgCGGGc -5'
19274 3' -61.6 NC_004685.1 + 5607 0.69 0.285446
Target:  5'- ---cACCG-UUCGAUCCGCUCGCCuCGa -3'
miRNA:   3'- uugaUGGCuGAGCUGGGCGGGCGG-GC- -5'
19274 3' -61.6 NC_004685.1 + 45363 0.69 0.285446
Target:  5'- cGACgucGCCGA----ACCCGCCUGCCCGc -3'
miRNA:   3'- -UUGa--UGGCUgagcUGGGCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 51858 0.69 0.292275
Target:  5'- cGCUcACCGACUUcaGGCCggccagcagcuUGCCCGCCUGa -3'
miRNA:   3'- uUGA-UGGCUGAG--CUGG-----------GCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 47401 0.69 0.299232
Target:  5'- cGACgaACCGGga-GGCCCGCCCGCCg- -3'
miRNA:   3'- -UUGa-UGGCUgagCUGGGCGGGCGGgc -5'
19274 3' -61.6 NC_004685.1 + 69006 0.69 0.313527
Target:  5'- cGCUGCCGaaguuuaugcgcGCUgcCGACCCGgCCGCCg- -3'
miRNA:   3'- uUGAUGGC------------UGA--GCUGGGCgGGCGGgc -5'
19274 3' -61.6 NC_004685.1 + 26451 0.68 0.328334
Target:  5'- cACgagACCGGCgUgGugCUGCCCGCCUc -3'
miRNA:   3'- uUGa--UGGCUG-AgCugGGCGGGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.