miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19274 3' -61.6 NC_004685.1 + 36458 0.67 0.418754
Target:  5'- ---cAUCGACUUcacCCCGCUCGCCUGg -3'
miRNA:   3'- uugaUGGCUGAGcu-GGGCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 5965 0.68 0.335929
Target:  5'- gAGC-GCCGACUaCGAUCCGCgCGUgCGg -3'
miRNA:   3'- -UUGaUGGCUGA-GCUGGGCGgGCGgGC- -5'
19274 3' -61.6 NC_004685.1 + 57023 0.68 0.342873
Target:  5'- uGCggGCCGACcuucaccUUGACCCGCCCGgCgGc -3'
miRNA:   3'- uUGa-UGGCUG-------AGCUGGGCGGGCgGgC- -5'
19274 3' -61.6 NC_004685.1 + 43688 0.68 0.359476
Target:  5'- cGGCgACCGGCUgCGcACCCuGCCCGgCUGg -3'
miRNA:   3'- -UUGaUGGCUGA-GC-UGGG-CGGGCgGGC- -5'
19274 3' -61.6 NC_004685.1 + 260 0.68 0.367578
Target:  5'- cGAC-ACCGACUCuuGCUCGUCUGCgCCGg -3'
miRNA:   3'- -UUGaUGGCUGAGc-UGGGCGGGCG-GGC- -5'
19274 3' -61.6 NC_004685.1 + 2604 0.68 0.374975
Target:  5'- cGGCaUACCG-CUCGGCCUGCUCggcagcgacggcuGCCCa -3'
miRNA:   3'- -UUG-AUGGCuGAGCUGGGCGGG-------------CGGGc -5'
19274 3' -61.6 NC_004685.1 + 57256 0.68 0.375804
Target:  5'- gGGCUGCCGccuuCUCGGCgaUgGCCCGCaCCu -3'
miRNA:   3'- -UUGAUGGCu---GAGCUG--GgCGGGCG-GGc -5'
19274 3' -61.6 NC_004685.1 + 1485 0.67 0.409927
Target:  5'- cGCUagGCCGACguagaGaACCCGCUgGCCCc -3'
miRNA:   3'- uUGA--UGGCUGag---C-UGGGCGGgCGGGc -5'
19274 3' -61.6 NC_004685.1 + 55428 0.67 0.409927
Target:  5'- ---cGCCaGACUCGACuCCGacaCCGCCUu -3'
miRNA:   3'- uugaUGG-CUGAGCUG-GGCg--GGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 26451 0.68 0.328334
Target:  5'- cACgagACCGGCgUgGugCUGCCCGCCUc -3'
miRNA:   3'- uUGa--UGGCUG-AgCugGGCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 4164 0.68 0.328334
Target:  5'- gAGCuUGCCGACgacGCCCGCCaGCUCGg -3'
miRNA:   3'- -UUG-AUGGCUGagcUGGGCGGgCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 51858 0.69 0.292275
Target:  5'- cGCUcACCGACUUcaGGCCggccagcagcuUGCCCGCCUGa -3'
miRNA:   3'- uUGA-UGGCUGAG--CUGG-----------GCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 55131 0.73 0.161225
Target:  5'- cACcACCGACUCGucuACCUGCgCGCCCu -3'
miRNA:   3'- uUGaUGGCUGAGC---UGGGCGgGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 39280 0.72 0.187948
Target:  5'- ---cGCCGugUuCGGCCCGCCCGuuggucgcggcCCCGg -3'
miRNA:   3'- uugaUGGCugA-GCUGGGCGGGC-----------GGGC- -5'
19274 3' -61.6 NC_004685.1 + 49980 0.72 0.187948
Target:  5'- aGAUgugGCCGAacgcCUCGGCCCGCCaCGgCCGc -3'
miRNA:   3'- -UUGa--UGGCU----GAGCUGGGCGG-GCgGGC- -5'
19274 3' -61.6 NC_004685.1 + 57463 0.71 0.22398
Target:  5'- gGGCUcuucGCuCGGCUCGaagucgaugGCCCGCCCGCUgGg -3'
miRNA:   3'- -UUGA----UG-GCUGAGC---------UGGGCGGGCGGgC- -5'
19274 3' -61.6 NC_004685.1 + 32607 0.71 0.241142
Target:  5'- ---cACCGGCacCGGCCCGCCC-CCUGg -3'
miRNA:   3'- uugaUGGCUGa-GCUGGGCGGGcGGGC- -5'
19274 3' -61.6 NC_004685.1 + 40482 0.7 0.257513
Target:  5'- cGCUGCCGcagauucaggcgcuGCUCGGCCCGCUgGCguuccuggCCGg -3'
miRNA:   3'- uUGAUGGC--------------UGAGCUGGGCGGgCG--------GGC- -5'
19274 3' -61.6 NC_004685.1 + 5607 0.69 0.285446
Target:  5'- ---cACCG-UUCGAUCCGCUCGCCuCGa -3'
miRNA:   3'- uugaUGGCuGAGCUGGGCGGGCGG-GC- -5'
19274 3' -61.6 NC_004685.1 + 30131 0.69 0.285446
Target:  5'- cGCgGCCGcACUCGGCCCGgCaGCCCc -3'
miRNA:   3'- uUGaUGGC-UGAGCUGGGCgGgCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.