miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19274 3' -61.6 NC_004685.1 + 260 0.68 0.367578
Target:  5'- cGAC-ACCGACUCuuGCUCGUCUGCgCCGg -3'
miRNA:   3'- -UUGaUGGCUGAGc-UGGGCGGGCG-GGC- -5'
19274 3' -61.6 NC_004685.1 + 1485 0.67 0.409927
Target:  5'- cGCUagGCCGACguagaGaACCCGCUgGCCCc -3'
miRNA:   3'- uUGA--UGGCUGag---C-UGGGCGGgCGGGc -5'
19274 3' -61.6 NC_004685.1 + 2226 0.66 0.464555
Target:  5'- uGGgUGCCGGgUgccaGACCUGCcugCCGCCCGg -3'
miRNA:   3'- -UUgAUGGCUgAg---CUGGGCG---GGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 2604 0.68 0.374975
Target:  5'- cGGCaUACCG-CUCGGCCUGCUCggcagcgacggcuGCCCa -3'
miRNA:   3'- -UUG-AUGGCuGAGCUGGGCGGG-------------CGGGc -5'
19274 3' -61.6 NC_004685.1 + 4164 0.68 0.328334
Target:  5'- gAGCuUGCCGACgacGCCCGCCaGCUCGg -3'
miRNA:   3'- -UUG-AUGGCUGagcUGGGCGGgCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 5607 0.69 0.285446
Target:  5'- ---cACCG-UUCGAUCCGCUCGCCuCGa -3'
miRNA:   3'- uugaUGGCuGAGCUGGGCGGGCGG-GC- -5'
19274 3' -61.6 NC_004685.1 + 5965 0.68 0.335929
Target:  5'- gAGC-GCCGACUaCGAUCCGCgCGUgCGg -3'
miRNA:   3'- -UUGaUGGCUGA-GCUGGGCGgGCGgGC- -5'
19274 3' -61.6 NC_004685.1 + 7023 0.66 0.43675
Target:  5'- gGAgaAUCGGCUCGGUCUGCUCGCCgCGc -3'
miRNA:   3'- -UUgaUGGCUGAGCUGGGCGGGCGG-GC- -5'
19274 3' -61.6 NC_004685.1 + 8511 0.66 0.464555
Target:  5'- cGCUACCGgaugggccgcAgUCGACCaGCCgGCUCGa -3'
miRNA:   3'- uUGAUGGC----------UgAGCUGGgCGGgCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 10238 0.67 0.427696
Target:  5'- gAGCUgACCGucaUCGACUgGCCgcUGCCCGa -3'
miRNA:   3'- -UUGA-UGGCug-AGCUGGgCGG--GCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 11225 0.66 0.482635
Target:  5'- uACggACCGuucacugaggaucACUCGuguCCUGCCUGCCUGg -3'
miRNA:   3'- uUGa-UGGC-------------UGAGCu--GGGCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 11336 0.66 0.445913
Target:  5'- --gUGCgCGACcggCGACCCGCcCCGacaCCGa -3'
miRNA:   3'- uugAUG-GCUGa--GCUGGGCG-GGCg--GGC- -5'
19274 3' -61.6 NC_004685.1 + 11728 0.67 0.409927
Target:  5'- uGAC-ACCGcGCaCGGCCCGCUgUGCCCGa -3'
miRNA:   3'- -UUGaUGGC-UGaGCUGGGCGG-GCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 20070 0.66 0.483596
Target:  5'- cGACcACCuGGCguucgUCGGCCaGCCCGCCUa -3'
miRNA:   3'- -UUGaUGG-CUG-----AGCUGGgCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 20981 0.8 0.051005
Target:  5'- cGACUucAUCGACUCGGCCCGUCCGCUgGu -3'
miRNA:   3'- -UUGA--UGGCUGAGCUGGGCGGGCGGgC- -5'
19274 3' -61.6 NC_004685.1 + 25355 0.7 0.278743
Target:  5'- cGGCcACCGcgUCGACCagggugCGCCCGCCCa -3'
miRNA:   3'- -UUGaUGGCugAGCUGG------GCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 26451 0.68 0.328334
Target:  5'- cACgagACCGGCgUgGugCUGCCCGCCUc -3'
miRNA:   3'- uUGa--UGGCUG-AgCugGGCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 27914 0.66 0.455183
Target:  5'- uGCUGCgucGCUCGACCgCGCCgucaaCGCCCc -3'
miRNA:   3'- uUGAUGgc-UGAGCUGG-GCGG-----GCGGGc -5'
19274 3' -61.6 NC_004685.1 + 30131 0.69 0.285446
Target:  5'- cGCgGCCGcACUCGGCCCGgCaGCCCc -3'
miRNA:   3'- uUGaUGGC-UGAGCUGGGCgGgCGGGc -5'
19274 3' -61.6 NC_004685.1 + 31760 0.7 0.253183
Target:  5'- cAGCU-CCGAC-C-ACCCGCCCGCUgGg -3'
miRNA:   3'- -UUGAuGGCUGaGcUGGGCGGGCGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.