miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19277 3' -57.4 NC_004685.1 + 10730 0.66 0.691985
Target:  5'- cCGGUGGuGcGGCUGGaCaucAACGCGcUCa -3'
miRNA:   3'- -GCCACCuCuUCGACC-Ggc-UUGCGC-AG- -5'
19277 3' -57.4 NC_004685.1 + 5443 0.66 0.691985
Target:  5'- gGGUGGAccuguaucuGCgGGCCGGcGCGgGUCa -3'
miRNA:   3'- gCCACCUcuu------CGaCCGGCU-UGCgCAG- -5'
19277 3' -57.4 NC_004685.1 + 33295 0.66 0.681432
Target:  5'- gGGcGGGGAAGUUGcccaggccgccGUCGGGCGCGg- -3'
miRNA:   3'- gCCaCCUCUUCGAC-----------CGGCUUGCGCag -5'
19277 3' -57.4 NC_004685.1 + 34417 0.66 0.670835
Target:  5'- aGGUGGAGAacGGUgacGCgGAcACGCGUg -3'
miRNA:   3'- gCCACCUCU--UCGac-CGgCU-UGCGCAg -5'
19277 3' -57.4 NC_004685.1 + 19172 0.66 0.669773
Target:  5'- gGGaGGAGAuggauggcuccggGGCUgccGGCCGGuuCGUGUCa -3'
miRNA:   3'- gCCaCCUCU-------------UCGA---CCGGCUu-GCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 53365 0.66 0.660204
Target:  5'- cCGGUGGccgcggcGAuGCUGGCC-AGCuCGUCg -3'
miRNA:   3'- -GCCACCu------CUuCGACCGGcUUGcGCAG- -5'
19277 3' -57.4 NC_004685.1 + 53566 0.66 0.660204
Target:  5'- ---aGGGGAccgUGGCCGuGCGCGUCg -3'
miRNA:   3'- gccaCCUCUucgACCGGCuUGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 2833 0.66 0.649548
Target:  5'- gGGUGGGGgcGUUGGgCacGCGgGUCc -3'
miRNA:   3'- gCCACCUCuuCGACCgGcuUGCgCAG- -5'
19277 3' -57.4 NC_004685.1 + 29637 0.66 0.649548
Target:  5'- gGGcUGG-GAAGCccucaaGGCUGucgGCGCGUCa -3'
miRNA:   3'- gCC-ACCuCUUCGa-----CCGGCu--UGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 50460 0.66 0.649548
Target:  5'- --aUGGcGggGCUGGUCagccaguGCGCGUCg -3'
miRNA:   3'- gccACCuCuuCGACCGGcu-----UGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 17137 0.66 0.638877
Target:  5'- gCGGccgcUGGAGuuccGGCUGaacCUGAugGCGUCg -3'
miRNA:   3'- -GCC----ACCUCu---UCGACc--GGCUugCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 10546 0.66 0.63781
Target:  5'- gGGUGGcuucGAcaacgugGGCgGGCUGGACGUGUUc -3'
miRNA:   3'- gCCACCu---CU-------UCGaCCGGCUUGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 63268 0.67 0.606866
Target:  5'- ---cGcAGgcGCUGGCCGAACGgGUUg -3'
miRNA:   3'- gccaCcUCuuCGACCGGCUUGCgCAG- -5'
19277 3' -57.4 NC_004685.1 + 65477 0.67 0.600479
Target:  5'- gGGUGcGAGAaggcgcucaAGCaguucggcacccaacUGGCCGAGCuggcggGCGUCg -3'
miRNA:   3'- gCCAC-CUCU---------UCG---------------ACCGGCUUG------CGCAG- -5'
19277 3' -57.4 NC_004685.1 + 17236 0.67 0.596225
Target:  5'- gCGcGUGGcGGGAGUUcGCCGAACGCa-- -3'
miRNA:   3'- -GC-CACC-UCUUCGAcCGGCUUGCGcag -5'
19277 3' -57.4 NC_004685.1 + 38263 0.67 0.596225
Target:  5'- aGGccauuGAGAAGCUGGUCGAccaGCuCGUCu -3'
miRNA:   3'- gCCac---CUCUUCGACCGGCU---UGcGCAG- -5'
19277 3' -57.4 NC_004685.1 + 32147 0.67 0.596225
Target:  5'- aGGUucAGggGCUGGauGAACGCGg- -3'
miRNA:   3'- gCCAccUCuuCGACCggCUUGCGCag -5'
19277 3' -57.4 NC_004685.1 + 8106 0.67 0.585613
Target:  5'- uCGGUGGucaacgcGCUGGCCGAGgcCGgGUUc -3'
miRNA:   3'- -GCCACCucuu---CGACCGGCUU--GCgCAG- -5'
19277 3' -57.4 NC_004685.1 + 6044 0.67 0.585613
Target:  5'- aGGUGGAGAAGUaccCCGAGCG-GUa -3'
miRNA:   3'- gCCACCUCUUCGaccGGCUUGCgCAg -5'
19277 3' -57.4 NC_004685.1 + 58463 0.67 0.585613
Target:  5'- uCGGUGGuGAuuucGC-GGCCaccgucggcGAACGCGUUg -3'
miRNA:   3'- -GCCACCuCUu---CGaCCGG---------CUUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.