miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19277 5' -54.2 NC_004685.1 + 65483 1.11 0.001088
Target:  5'- gAGAAGGCGCUCAAGCAGUUCGGCACCc -3'
miRNA:   3'- -UCUUCCGCGAGUUCGUCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 6562 0.83 0.096829
Target:  5'- uGGAGGUGCU--GGCAGcUCGGCACCg -3'
miRNA:   3'- uCUUCCGCGAguUCGUCaAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 11529 0.77 0.245051
Target:  5'- cAGAcGGCGCUCAuGCG--UCGGCGCUg -3'
miRNA:   3'- -UCUuCCGCGAGUuCGUcaAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 27197 0.76 0.271501
Target:  5'- cAGAAGcaCGCUCGacggcuGGCgaAGUUCGGCACCa -3'
miRNA:   3'- -UCUUCc-GCGAGU------UCG--UCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 15023 0.76 0.285565
Target:  5'- cGGAGGUGCUgAcGCAGgaCGGCACg -3'
miRNA:   3'- uCUUCCGCGAgUuCGUCaaGCCGUGg -5'
19277 5' -54.2 NC_004685.1 + 10866 0.76 0.295012
Target:  5'- uGGAAGGCGCggugUCGGGCAGUgccgacgguggcgugUCGGCcgacgcgcucgguGCCa -3'
miRNA:   3'- -UCUUCCGCG----AGUUCGUCA---------------AGCCG-------------UGG- -5'
19277 5' -54.2 NC_004685.1 + 14548 0.74 0.355928
Target:  5'- cGAGGGCGCgCAGGUAGacgagUCGGUggugACCg -3'
miRNA:   3'- uCUUCCGCGaGUUCGUCa----AGCCG----UGG- -5'
19277 5' -54.2 NC_004685.1 + 6335 0.74 0.373132
Target:  5'- ---cGGCGCUgAAGguGUUCGGUuuCCg -3'
miRNA:   3'- ucuuCCGCGAgUUCguCAAGCCGu-GG- -5'
19277 5' -54.2 NC_004685.1 + 29079 0.73 0.390893
Target:  5'- cGcuGGCGCggcGGC-GUUCGGCACCa -3'
miRNA:   3'- uCuuCCGCGaguUCGuCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 24028 0.73 0.409196
Target:  5'- --cGGGCGUUCuGGCGGUUgGGCGgCa -3'
miRNA:   3'- ucuUCCGCGAGuUCGUCAAgCCGUgG- -5'
19277 5' -54.2 NC_004685.1 + 11987 0.73 0.428024
Target:  5'- cGAAGGCGCUCGacguggGGCAGaugcucucgcCGGaCGCCa -3'
miRNA:   3'- uCUUCCGCGAGU------UCGUCaa--------GCC-GUGG- -5'
19277 5' -54.2 NC_004685.1 + 17096 0.73 0.428024
Target:  5'- gAGcuGGuCGagUCGcAGCGGUUCGGCGCCg -3'
miRNA:   3'- -UCuuCC-GCg-AGU-UCGUCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 29829 0.73 0.428024
Target:  5'- -uGAGGCauccgacuucCUCAAGCuGUUCGGCAUCg -3'
miRNA:   3'- ucUUCCGc---------GAGUUCGuCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 20290 0.72 0.457201
Target:  5'- gGGGAGGaaguGCUCAccAGCug-UCGGCACUg -3'
miRNA:   3'- -UCUUCCg---CGAGU--UCGucaAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 21619 0.72 0.467162
Target:  5'- cGAucgaGUGCuUCGAGCAGcgggUCGGCACCc -3'
miRNA:   3'- uCUuc--CGCG-AGUUCGUCa---AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 35106 0.72 0.49151
Target:  5'- --cAGGCGCUC-GGCAGcgUCGGCcgcggucaucggaucGCCg -3'
miRNA:   3'- ucuUCCGCGAGuUCGUCa-AGCCG---------------UGG- -5'
19277 5' -54.2 NC_004685.1 + 13910 0.71 0.52908
Target:  5'- -cGAGGCGagccugacCAAGCAGUUCGuCGCCa -3'
miRNA:   3'- ucUUCCGCga------GUUCGUCAAGCcGUGG- -5'
19277 5' -54.2 NC_004685.1 + 31083 0.71 0.52908
Target:  5'- uGGGugcGGCGCUCGAcGCcgacUUCGGCAUCa -3'
miRNA:   3'- -UCUu--CCGCGAGUU-CGuc--AAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 45561 0.7 0.557935
Target:  5'- cGGAGGGCGCugugcugcccagcuUCGAGCcGUUCGaCACg -3'
miRNA:   3'- -UCUUCCGCG--------------AGUUCGuCAAGCcGUGg -5'
19277 5' -54.2 NC_004685.1 + 22339 0.7 0.56117
Target:  5'- ---cGuGCGCUCGcGCuGUUCGGCgGCCg -3'
miRNA:   3'- ucuuC-CGCGAGUuCGuCAAGCCG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.