miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19277 5' -54.2 NC_004685.1 + 19752 0.68 0.724467
Target:  5'- cGGAGGUGUUCAcccGCAGcgccuucaaCGGCAUCg -3'
miRNA:   3'- uCUUCCGCGAGUu--CGUCaa-------GCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 47553 0.69 0.637643
Target:  5'- cAGguGGCGggCAGGguGUUCGGaaACCg -3'
miRNA:   3'- -UCuuCCGCgaGUUCguCAAGCCg-UGG- -5'
19277 5' -54.2 NC_004685.1 + 31232 0.69 0.648623
Target:  5'- -aAGGGCgucgGCUCGGGCcuggUCGGCAUCg -3'
miRNA:   3'- ucUUCCG----CGAGUUCGuca-AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 33837 0.69 0.648623
Target:  5'- -cGAGGUGUucaccgUCAAGgAGaaCGGCACCg -3'
miRNA:   3'- ucUUCCGCG------AGUUCgUCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 58108 0.69 0.669435
Target:  5'- uGAGGGCGUUCGauuucgcgcuucuGGUAGgcgCGGUugCc -3'
miRNA:   3'- uCUUCCGCGAGU-------------UCGUCaa-GCCGugG- -5'
19277 5' -54.2 NC_004685.1 + 7352 0.68 0.681431
Target:  5'- uGGAAGGCGa--AGGCgugGGUgaUCGGUGCCc -3'
miRNA:   3'- -UCUUCCGCgagUUCG---UCA--AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 6693 0.68 0.681431
Target:  5'- -cAAGGaGCcCGAGguGggCGGCACCc -3'
miRNA:   3'- ucUUCCgCGaGUUCguCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 47237 0.68 0.713817
Target:  5'- uGGAgcAGGUGCagAAGCAGUgCGaCGCCu -3'
miRNA:   3'- -UCU--UCCGCGagUUCGUCAaGCcGUGG- -5'
19277 5' -54.2 NC_004685.1 + 30822 0.68 0.723406
Target:  5'- uGGAAGGUucagcagGCUCAguGGCAGgucgaGGaCGCCa -3'
miRNA:   3'- -UCUUCCG-------CGAGU--UCGUCaag--CC-GUGG- -5'
19277 5' -54.2 NC_004685.1 + 45793 0.69 0.615678
Target:  5'- gAGgcGGUGCgCAAGCuggcccuggaGGUggcgcagcgcaUCGGCACCg -3'
miRNA:   3'- -UCuuCCGCGaGUUCG----------UCA-----------AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 14021 0.7 0.604712
Target:  5'- -cGAGGCGgUCGaguucgccaacGGCAgccgcauccuGUUCGGCGCCc -3'
miRNA:   3'- ucUUCCGCgAGU-----------UCGU----------CAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 37736 0.7 0.604712
Target:  5'- uGAAGGCGCUgcUggGCAuccCGGCuGCCg -3'
miRNA:   3'- uCUUCCGCGA--GuuCGUcaaGCCG-UGG- -5'
19277 5' -54.2 NC_004685.1 + 27197 0.76 0.271501
Target:  5'- cAGAAGcaCGCUCGacggcuGGCgaAGUUCGGCACCa -3'
miRNA:   3'- -UCUUCc-GCGAGU------UCG--UCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 6335 0.74 0.373132
Target:  5'- ---cGGCGCUgAAGguGUUCGGUuuCCg -3'
miRNA:   3'- ucuuCCGCGAgUUCguCAAGCCGu-GG- -5'
19277 5' -54.2 NC_004685.1 + 29079 0.73 0.390893
Target:  5'- cGcuGGCGCggcGGC-GUUCGGCACCa -3'
miRNA:   3'- uCuuCCGCGaguUCGuCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 29829 0.73 0.428024
Target:  5'- -uGAGGCauccgacuucCUCAAGCuGUUCGGCAUCg -3'
miRNA:   3'- ucUUCCGc---------GAGUUCGuCAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 21619 0.72 0.467162
Target:  5'- cGAucgaGUGCuUCGAGCAGcgggUCGGCACCc -3'
miRNA:   3'- uCUuc--CGCG-AGUUCGUCa---AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 31083 0.71 0.52908
Target:  5'- uGGGugcGGCGCUCGAcGCcgacUUCGGCAUCa -3'
miRNA:   3'- -UCUu--CCGCGAGUU-CGuc--AAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 45561 0.7 0.557935
Target:  5'- cGGAGGGCGCugugcugcccagcuUCGAGCcGUUCGaCACg -3'
miRNA:   3'- -UCUUCCGCG--------------AGUUCGuCAAGCcGUGg -5'
19277 5' -54.2 NC_004685.1 + 1978 0.7 0.56117
Target:  5'- -uGGGGCGCUCccGCG--UCGGCGCUg -3'
miRNA:   3'- ucUUCCGCGAGuuCGUcaAGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.