miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19277 5' -54.2 NC_004685.1 + 415 0.66 0.799676
Target:  5'- cGgcGGCgaGCUCGGggcuaagcaucagccGCGGUcggugaggUCGGCGCCa -3'
miRNA:   3'- uCuuCCG--CGAGUU---------------CGUCA--------AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 1978 0.7 0.56117
Target:  5'- -uGGGGCGCUCccGCG--UCGGCGCUg -3'
miRNA:   3'- ucUUCCGCGAGuuCGUcaAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 5881 0.69 0.637643
Target:  5'- cGGGAGGCGCagGAGCAGgc--GCAgCg -3'
miRNA:   3'- -UCUUCCGCGagUUCGUCaagcCGUgG- -5'
19277 5' -54.2 NC_004685.1 + 6335 0.74 0.373132
Target:  5'- ---cGGCGCUgAAGguGUUCGGUuuCCg -3'
miRNA:   3'- ucuuCCGCGAgUUCguCAAGCCGu-GG- -5'
19277 5' -54.2 NC_004685.1 + 6562 0.83 0.096829
Target:  5'- uGGAGGUGCU--GGCAGcUCGGCACCg -3'
miRNA:   3'- uCUUCCGCGAguUCGUCaAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 6693 0.68 0.681431
Target:  5'- -cAAGGaGCcCGAGguGggCGGCACCc -3'
miRNA:   3'- ucUUCCgCGaGUUCguCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 7352 0.68 0.681431
Target:  5'- uGGAAGGCGa--AGGCgugGGUgaUCGGUGCCc -3'
miRNA:   3'- -UCUUCCGCgagUUCG---UCA--AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 7501 0.69 0.670527
Target:  5'- uGGAAGGCGCgggccgCAAGCcGUaccCGGCGa- -3'
miRNA:   3'- -UCUUCCGCGa-----GUUCGuCAa--GCCGUgg -5'
19277 5' -54.2 NC_004685.1 + 8829 0.67 0.755822
Target:  5'- uGGAGGgGUUCGaugugcGGCAGg-CGGuCACCg -3'
miRNA:   3'- uCUUCCgCGAGU------UCGUCaaGCC-GUGG- -5'
19277 5' -54.2 NC_004685.1 + 8873 0.7 0.593769
Target:  5'- aAGGAGGCGCUgGacuuccugcguuGGCAcauugCGGCGCUg -3'
miRNA:   3'- -UCUUCCGCGAgU------------UCGUcaa--GCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 9890 0.66 0.795815
Target:  5'- ---uGGaCGaCUCGGGCGG--CGGCACCc -3'
miRNA:   3'- ucuuCC-GC-GAGUUCGUCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 10866 0.76 0.295012
Target:  5'- uGGAAGGCGCggugUCGGGCAGUgccgacgguggcgugUCGGCcgacgcgcucgguGCCa -3'
miRNA:   3'- -UCUUCCGCG----AGUUCGUCA---------------AGCCG-------------UGG- -5'
19277 5' -54.2 NC_004685.1 + 11529 0.77 0.245051
Target:  5'- cAGAcGGCGCUCAuGCG--UCGGCGCUg -3'
miRNA:   3'- -UCUuCCGCGAGUuCGUcaAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 11987 0.73 0.428024
Target:  5'- cGAAGGCGCUCGacguggGGCAGaugcucucgcCGGaCGCCa -3'
miRNA:   3'- uCUUCCGCGAGU------UCGUCaa--------GCC-GUGG- -5'
19277 5' -54.2 NC_004685.1 + 12354 0.67 0.755822
Target:  5'- -uGAGGCGCUaUGAGUAG--CGGCAUCc -3'
miRNA:   3'- ucUUCCGCGA-GUUCGUCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 13910 0.71 0.52908
Target:  5'- -cGAGGCGagccugacCAAGCAGUUCGuCGCCa -3'
miRNA:   3'- ucUUCCGCga------GUUCGUCAAGCcGUGG- -5'
19277 5' -54.2 NC_004685.1 + 14021 0.7 0.604712
Target:  5'- -cGAGGCGgUCGaguucgccaacGGCAgccgcauccuGUUCGGCGCCc -3'
miRNA:   3'- ucUUCCGCgAGU-----------UCGU----------CAAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 14548 0.74 0.355928
Target:  5'- cGAGGGCGCgCAGGUAGacgagUCGGUggugACCg -3'
miRNA:   3'- uCUUCCGCGaGUUCGUCa----AGCCG----UGG- -5'
19277 5' -54.2 NC_004685.1 + 15023 0.76 0.285565
Target:  5'- cGGAGGUGCUgAcGCAGgaCGGCACg -3'
miRNA:   3'- uCUUCCGCGAgUuCGUCaaGCCGUGg -5'
19277 5' -54.2 NC_004685.1 + 16539 0.67 0.735025
Target:  5'- cGAAGGCGacc--GCGGUgauggCGGCGCUc -3'
miRNA:   3'- uCUUCCGCgaguuCGUCAa----GCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.