miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19279 5' -57.9 NC_004685.1 + 67795 0.67 0.58739
Target:  5'- aGCGGGCacgGcCGCGGCCUGAccGaCGc -3'
miRNA:   3'- -CGCCUGga-CuGCGCCGGGCUuaCaGC- -5'
19279 5' -57.9 NC_004685.1 + 65119 1.1 0.000809
Target:  5'- aGCGGACCUGACGCGGCCCGAAUGUCGc -3'
miRNA:   3'- -CGCCUGGACUGCGCCGGGCUUACAGC- -5'
19279 5' -57.9 NC_004685.1 + 64512 0.66 0.660805
Target:  5'- uGCGGcuuccACCUgacgacGACGUGGCCguCGAGUGUg- -3'
miRNA:   3'- -CGCC-----UGGA------CUGCGCCGG--GCUUACAgc -5'
19279 5' -57.9 NC_004685.1 + 62738 0.71 0.376401
Target:  5'- uGCGGGCUUGAC-CGGCUCGGggGcCa -3'
miRNA:   3'- -CGCCUGGACUGcGCCGGGCUuaCaGc -5'
19279 5' -57.9 NC_004685.1 + 61872 0.72 0.351743
Target:  5'- aGCGGACCgcaccccguUGAC-CGGcCCCGAGUGcCa -3'
miRNA:   3'- -CGCCUGG---------ACUGcGCC-GGGCUUACaGc -5'
19279 5' -57.9 NC_004685.1 + 58311 0.73 0.296642
Target:  5'- cGCGGACCUugguCGGCCCGGccggcacagccucgGUGUCGg -3'
miRNA:   3'- -CGCCUGGAcugcGCCGGGCU--------------UACAGC- -5'
19279 5' -57.9 NC_004685.1 + 58094 0.66 0.681693
Target:  5'- uGCGG-CCUG-CGCGGCUCGccg--CGa -3'
miRNA:   3'- -CGCCuGGACuGCGCCGGGCuuacaGC- -5'
19279 5' -57.9 NC_004685.1 + 57961 0.67 0.629312
Target:  5'- aGCGGGCCguGCGCGGUgucagcgcacagCCGggUGa-- -3'
miRNA:   3'- -CGCCUGGacUGCGCCG------------GGCuuACagc -5'
19279 5' -57.9 NC_004685.1 + 53540 0.66 0.681693
Target:  5'- --cGACCUGGCGCGGCgCGGccGa-- -3'
miRNA:   3'- cgcCUGGACUGCGCCGgGCUuaCagc -5'
19279 5' -57.9 NC_004685.1 + 52152 0.68 0.546008
Target:  5'- aGCGGua-UGcGCGCGGCCCGGcgaaguUGUUGa -3'
miRNA:   3'- -CGCCuggAC-UGCGCCGGGCUu-----ACAGC- -5'
19279 5' -57.9 NC_004685.1 + 51221 0.71 0.390883
Target:  5'- aGCGGGCCauccagcucaugcuUGAUgaugcucaGCGGCuuGAGUGUCc -3'
miRNA:   3'- -CGCCUGG--------------ACUG--------CGCCGggCUUACAGc -5'
19279 5' -57.9 NC_004685.1 + 50893 0.67 0.618807
Target:  5'- cGCGGugCc-GCGCGGuCCuCGGcgGUCa -3'
miRNA:   3'- -CGCCugGacUGCGCC-GG-GCUuaCAGc -5'
19279 5' -57.9 NC_004685.1 + 49844 0.66 0.692077
Target:  5'- gGUGGACaucaucuCGCGGCCCucaggGUCGg -3'
miRNA:   3'- -CGCCUGgacu---GCGCCGGGcuua-CAGC- -5'
19279 5' -57.9 NC_004685.1 + 48752 0.68 0.566602
Target:  5'- uUGGGcuCCUGGuCGUGGCCCaGcAUGUCGc -3'
miRNA:   3'- cGCCU--GGACU-GCGCCGGG-CuUACAGC- -5'
19279 5' -57.9 NC_004685.1 + 48160 0.72 0.320684
Target:  5'- gGCuGGCCcGAUGUGGCCCGGcucGUCGg -3'
miRNA:   3'- -CGcCUGGaCUGCGCCGGGCUua-CAGC- -5'
19279 5' -57.9 NC_004685.1 + 46386 0.67 0.639819
Target:  5'- cGCGGuuCUcGGCGUGGCCgCGGgcGUGaUCGc -3'
miRNA:   3'- -CGCCugGA-CUGCGCCGG-GCU--UAC-AGC- -5'
19279 5' -57.9 NC_004685.1 + 43140 0.69 0.505605
Target:  5'- aGCGcGAuCCUGGCGaCGcGCaCCGAGUG-CGg -3'
miRNA:   3'- -CGC-CU-GGACUGC-GC-CG-GGCUUACaGC- -5'
19279 5' -57.9 NC_004685.1 + 40764 0.66 0.681693
Target:  5'- uGCGcGCCgcccaGCGGCCCGg--GUCGa -3'
miRNA:   3'- -CGCcUGGacug-CGCCGGGCuuaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 40585 0.66 0.671265
Target:  5'- cUGGGCC-GGCGCGGCCgGuucccUCGg -3'
miRNA:   3'- cGCCUGGaCUGCGCCGGgCuuac-AGC- -5'
19279 5' -57.9 NC_004685.1 + 40552 0.69 0.505605
Target:  5'- aGCGGAgCUGGaGUGGaCCGcGGUGUCGa -3'
miRNA:   3'- -CGCCUgGACUgCGCCgGGC-UUACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.