miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19281 5' -56.7 NC_004685.1 + 10536 0.66 0.708494
Target:  5'- -cGCcGCGGCCGGGUG-GCuucgacaaCGUGGg -3'
miRNA:   3'- acUGaCGUCGGUCCACaCGua------GCGCC- -5'
19281 5' -56.7 NC_004685.1 + 14948 0.66 0.708494
Target:  5'- aUGGCggUGCGGCguGaGUucGUGCGUCGCu- -3'
miRNA:   3'- -ACUG--ACGUCGguC-CA--CACGUAGCGcc -5'
19281 5' -56.7 NC_004685.1 + 54013 0.66 0.708494
Target:  5'- -uGCUGcCGGUggaugugccaugCAGGUGUGCGgggaugcCGCGGg -3'
miRNA:   3'- acUGAC-GUCG------------GUCCACACGUa------GCGCC- -5'
19281 5' -56.7 NC_004685.1 + 24978 0.66 0.687299
Target:  5'- gUGAUgaacaGCGGCCGGGUGUcCGgccCGgGGg -3'
miRNA:   3'- -ACUGa----CGUCGGUCCACAcGUa--GCgCC- -5'
19281 5' -56.7 NC_004685.1 + 5429 0.66 0.676621
Target:  5'- gGACaGCcuGGCCAgGGUGgaccUGUAUCuGCGGg -3'
miRNA:   3'- aCUGaCG--UCGGU-CCAC----ACGUAG-CGCC- -5'
19281 5' -56.7 NC_004685.1 + 38842 0.66 0.676621
Target:  5'- cGGCUGCcgcGCCGGucgGUGCc-CGCGGu -3'
miRNA:   3'- aCUGACGu--CGGUCca-CACGuaGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 19909 0.66 0.67555
Target:  5'- gGGUUGCuGCCGaugacgcGG-GUGUAUCGCGGc -3'
miRNA:   3'- aCUGACGuCGGU-------CCaCACGUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 8667 0.66 0.665901
Target:  5'- cUGAgUGCGGCaCGacGaUGUGCAUCGcCGGc -3'
miRNA:   3'- -ACUgACGUCG-GU--CcACACGUAGC-GCC- -5'
19281 5' -56.7 NC_004685.1 + 50666 0.67 0.644382
Target:  5'- cGACaggGCAGCCAGcGUGcGCcacaccuUCGCGu -3'
miRNA:   3'- aCUGa--CGUCGGUC-CACaCGu------AGCGCc -5'
19281 5' -56.7 NC_004685.1 + 7740 0.67 0.644382
Target:  5'- aGGCccGCAGCCAGGacGUGCAcgacCGCa- -3'
miRNA:   3'- aCUGa-CGUCGGUCCa-CACGUa---GCGcc -5'
19281 5' -56.7 NC_004685.1 + 41850 0.68 0.5692
Target:  5'- gUGcACgGCGGCCGGGUGUuCcgCGCcGGu -3'
miRNA:   3'- -AC-UGaCGUCGGUCCACAcGuaGCG-CC- -5'
19281 5' -56.7 NC_004685.1 + 6555 0.68 0.558593
Target:  5'- cGACaaGCAG-CAGGUGcGCAUCGUGc -3'
miRNA:   3'- aCUGa-CGUCgGUCCACaCGUAGCGCc -5'
19281 5' -56.7 NC_004685.1 + 64181 0.68 0.558593
Target:  5'- cGACUuggcGguGCCGcGGUGUcGaguaGUCGCGGa -3'
miRNA:   3'- aCUGA----CguCGGU-CCACA-Cg---UAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 63247 0.68 0.558593
Target:  5'- gGGCUGUucgGGCCAGGUGaUGCccuUgGCGc -3'
miRNA:   3'- aCUGACG---UCGGUCCAC-ACGu--AgCGCc -5'
19281 5' -56.7 NC_004685.1 + 7152 0.69 0.527136
Target:  5'- cGugUuCGGCgGGGUG-GcCAUCGCGGu -3'
miRNA:   3'- aCugAcGUCGgUCCACaC-GUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 6021 0.69 0.516795
Target:  5'- cGAUgccGCGGCgGGGUGaUGUGUUGUGGc -3'
miRNA:   3'- aCUGa--CGUCGgUCCAC-ACGUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 66203 0.69 0.516795
Target:  5'- cGugUGCGGCCacgacgccaacaAGGgcugcccucaGUGCAUCcGCGGu -3'
miRNA:   3'- aCugACGUCGG------------UCCa---------CACGUAG-CGCC- -5'
19281 5' -56.7 NC_004685.1 + 25561 0.69 0.516795
Target:  5'- gGACUGCAGCgCGGuG-GUGCGcUUGuCGGa -3'
miRNA:   3'- aCUGACGUCG-GUC-CaCACGU-AGC-GCC- -5'
19281 5' -56.7 NC_004685.1 + 57555 0.69 0.505514
Target:  5'- -aGCUGCGcGCCAGGccgaucaucucgaUG-GCGUUGCGGu -3'
miRNA:   3'- acUGACGU-CGGUCC-------------ACaCGUAGCGCC- -5'
19281 5' -56.7 NC_004685.1 + 31240 0.69 0.486287
Target:  5'- cGGCUcgGGCCuGGUcgGCAUCGCGGc -3'
miRNA:   3'- aCUGAcgUCGGuCCAcaCGUAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.