miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19283 3' -54.5 NC_004685.1 + 61141 1.13 0.000976
Target:  5'- cGCAGACCCGACACCGGAUCAUCGAGCc -3'
miRNA:   3'- -CGUCUGGGCUGUGGCCUAGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 24400 0.79 0.200357
Target:  5'- cGCGGcCCCGACACCaacaucaguccguGGG-CAUCGGGCa -3'
miRNA:   3'- -CGUCuGGGCUGUGG-------------CCUaGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 48160 0.79 0.211596
Target:  5'- gGCuGGCCCGAUguggcCCGGcUCGUCGGGCa -3'
miRNA:   3'- -CGuCUGGGCUGu----GGCCuAGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 26213 0.76 0.300891
Target:  5'- cGCc--CCCGACGCCGGAcuUCAggcgcgCGAGCa -3'
miRNA:   3'- -CGucuGGGCUGUGGCCU--AGUa-----GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 44024 0.76 0.315795
Target:  5'- cGguGGCCCGACGCgCaGAUCAucUCGAuGCg -3'
miRNA:   3'- -CguCUGGGCUGUG-GcCUAGU--AGCU-CG- -5'
19283 3' -54.5 NC_004685.1 + 5718 0.75 0.347251
Target:  5'- cGCGGGugccagucacCCCGACacucGCCGGAUCGUCGGa- -3'
miRNA:   3'- -CGUCU----------GGGCUG----UGGCCUAGUAGCUcg -5'
19283 3' -54.5 NC_004685.1 + 6572 0.75 0.355458
Target:  5'- gGCAG-CUCGGCACCGGcugggCGAGCa -3'
miRNA:   3'- -CGUCuGGGCUGUGGCCuaguaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 11099 0.75 0.372276
Target:  5'- aCGGGCgCGACGCCGaGA-CGUUGGGCa -3'
miRNA:   3'- cGUCUGgGCUGUGGC-CUaGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 21512 0.74 0.389628
Target:  5'- cGguGcuGCCCGACgaGCCGGGccaCAUCGGGCc -3'
miRNA:   3'- -CguC--UGGGCUG--UGGCCUa--GUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 68007 0.74 0.416628
Target:  5'- gGCuGGCCCGACgGCUGGGUCAcuggacUgGGGCu -3'
miRNA:   3'- -CGuCUGGGCUG-UGGCCUAGU------AgCUCG- -5'
19283 3' -54.5 NC_004685.1 + 60206 0.73 0.425879
Target:  5'- aGC-GACCCGACGCCGccgacaAUCG-CGGGCa -3'
miRNA:   3'- -CGuCUGGGCUGUGGCc-----UAGUaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 24586 0.73 0.425879
Target:  5'- gGCGGACCCGagcggGCGCCGGAcaUC-UCGAa- -3'
miRNA:   3'- -CGUCUGGGC-----UGUGGCCU--AGuAGCUcg -5'
19283 3' -54.5 NC_004685.1 + 44761 0.73 0.464062
Target:  5'- uCGGACCCGACGCCGacaccgCG-CGGGCc -3'
miRNA:   3'- cGUCUGGGCUGUGGCcua---GUaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 55515 0.73 0.464062
Target:  5'- uGCAGGCCCaGGCGCgaGGuguUCAggguggCGAGCa -3'
miRNA:   3'- -CGUCUGGG-CUGUGg-CCu--AGUa-----GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 45670 0.72 0.493838
Target:  5'- cCAGaacGCCCGACAgCUGGAg-GUCGGGCu -3'
miRNA:   3'- cGUC---UGGGCUGU-GGCCUagUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 5458 0.72 0.493838
Target:  5'- uGCGGGCC-GGCG-CGGGUCAUCcGGCg -3'
miRNA:   3'- -CGUCUGGgCUGUgGCCUAGUAGcUCG- -5'
19283 3' -54.5 NC_004685.1 + 68442 0.72 0.514166
Target:  5'- cCGGAUCCGACAUCGGG-CA-CGuGCa -3'
miRNA:   3'- cGUCUGGGCUGUGGCCUaGUaGCuCG- -5'
19283 3' -54.5 NC_004685.1 + 10883 0.72 0.524457
Target:  5'- gGCAGugCCGACGgUGGcgUGUCG-GCc -3'
miRNA:   3'- -CGUCugGGCUGUgGCCuaGUAGCuCG- -5'
19283 3' -54.5 NC_004685.1 + 22455 0.71 0.534826
Target:  5'- cCAGACCCucGCGUCGGGUCGcggCGAGCu -3'
miRNA:   3'- cGUCUGGGc-UGUGGCCUAGUa--GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 31695 0.71 0.54422
Target:  5'- gGCAGAacCCCaACACCGGAcguaagaccggcaUCGggggCGGGCa -3'
miRNA:   3'- -CGUCU--GGGcUGUGGCCU-------------AGUa---GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.